MLT1H

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001014
TE superfamily	MaLR
TE order	LTR
Species	Eutheria
Length	549
Kimura value	27.41
Tau index	0.8986
Description	MLT1H Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1H has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGATTGATTGCAAAAATGGCCNCAATTCTTCACCCCTCCCTGTATCCACGCCCTTTGCAATGTGACTTTGCAGCTCCTCCCATCAAGAGGTGGAGTCTATTTCCCCACCCCTTGAATCTGGGCTGGCCTTGTGACTTGCTTTGGCCAATAGAATGCGGCGGAAGTGACGNTGTGCCAGTTCCGAGCCTAGGCCTCAAGAGGCCTTGCACGCTTCCGCTCTCTCTCTTGGAACCCTGCCACCGCCATGTGAACAAGCCCGGGCTAGCCTGCTGGAGGATGAGAGACCACGTGGAGCAGAGCCGAGCCGTCCCAGCTGAGGCCATCCTAGACCAGCCAGCCCCCAGCCAAGATCAGCAGAGCCGCCTACCCGACCCGCAGCTGACCGCAGACGCATGAGTGAGCCCAGCCGAGACCAGAAGAACCGCCCAGCTGAGCCCAGCCCAAATTGCCGACCCACAGAATCGTGAGCTAAAATAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGCTAACTGATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1H	DREB2F	240	250	+	17.29	CTGCCACCGCC
MLT1H	HLH4C	313	326	-	17.11	GCCTCAGCTGGGAC
MLT1H	HLH4C	313	326	+	16.84	GTCCCAGCTGAGGC
MLT1H	TP53	256	273	+	16.69	AACAAGCCCGGGCTAGCC
MLT1H	RAMOSA1	220	233	-	16.33	AAGAGAGAGAGCGG
MLT1H	ERF014	237	251	+	16.24	ACCCTGCCACCGCCA
MLT1H	TP53	256	273	-	16.10	GGCTAGCCCGGGCTTGTT
MLT1H	MAZ	39	46	+	16.08	CCCCTCCC
MLT1H	ZKSCAN3	264	277	-	16.01	AGCAGGCTAGCCCG
MLT1H	NFIX	232	245	+	15.87	TTGGAACCCTGCCA

1 2 3 4 ... 42

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).