MLT1H

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001014
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	549
Kimura value	27.41
Tau index	0.8986
Description	MLT1H Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1H has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGATTGATTGCAAAAATGGCCNCAATTCTTCACCCCTCCCTGTATCCACGCCCTTTGCAATGTGACTTTGCAGCTCCTCCCATCAAGAGGTGGAGTCTATTTCCCCACCCCTTGAATCTGGGCTGGCCTTGTGACTTGCTTTGGCCAATAGAATGCGGCGGAAGTGACGNTGTGCCAGTTCCGAGCCTAGGCCTCAAGAGGCCTTGCACGCTTCCGCTCTCTCTCTTGGAACCCTGCCACCGCCATGTGAACAAGCCCGGGCTAGCCTGCTGGAGGATGAGAGACCACGTGGAGCAGAGCCGAGCCGTCCCAGCTGAGGCCATCCTAGACCAGCCAGCCCCCAGCCAAGATCAGCAGAGCCGCCTACCCGACCCGCAGCTGACCGCAGACGCATGAGTGAGCCCAGCCGAGACCAGAAGAACCGCCCAGCTGAGCCCAGCCCAAATTGCCGACCCACAGAATCGTGAGCTAAAATAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGCTAACTGATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1H	NFIB	231	247	-	14.65	GGTGGCAGGGTTCCAAG
MLT1H	KLF1	109	116	-	14.64	GGGTGGGG
MLT1H	RAP2-6	159	173	+	14.64	ATGCGGCGGAAGTGA
MLT1H	KLF6	52	60	+	14.64	CCACGCCCT
MLT1H	mxl-3	291	298	+	14.59	CCACGTGG
MLT1H	mxl-3	291	298	-	14.59	CCACGTGG
MLT1H	ERF012	243	250	+	14.52	CCACCGCC
MLT1H	INO4	249	257	+	14.43	CCATGTGAA
MLT1H	ERF055	243	251	-	14.36	TGGCGGTGG
MLT1H	mxl-1	291	298	+	14.33	CCACGTGG

1 2 3 4 5 6 7 ... 42

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).