MLT1H

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001014
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	549
Kimura value	27.41
Tau index	0.8986
Description	MLT1H Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1H has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGATTGATTGCAAAAATGGCCNCAATTCTTCACCCCTCCCTGTATCCACGCCCTTTGCAATGTGACTTTGCAGCTCCTCCCATCAAGAGGTGGAGTCTATTTCCCCACCCCTTGAATCTGGGCTGGCCTTGTGACTTGCTTTGGCCAATAGAATGCGGCGGAAGTGACGNTGTGCCAGTTCCGAGCCTAGGCCTCAAGAGGCCTTGCACGCTTCCGCTCTCTCTCTTGGAACCCTGCCACCGCCATGTGAACAAGCCCGGGCTAGCCTGCTGGAGGATGAGAGACCACGTGGAGCAGAGCCGAGCCGTCCCAGCTGAGGCCATCCTAGACCAGCCAGCCCCCAGCCAAGATCAGCAGAGCCGCCTACCCGACCCGCAGCTGACCGCAGACGCATGAGTGAGCCCAGCCGAGACCAGAAGAACCGCCCAGCTGAGCCCAGCCCAAATTGCCGACCCACAGAATCGTGAGCTAAAATAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGCTAACTGATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1H	ETV6	164	172	+	15.77	GCGGAAGTG
MLT1H	Zfx	191	200	+	15.73	GCCTAGGCCT
MLT1H	DREB2D	237	250	+	15.71	ACCCTGCCACCGCC
MLT1H	Trl	225	233	-	15.63	AAGAGAGAG
MLT1H	ERF013	243	251	-	15.61	TGGCGGTGG
MLT1H	KLF4	109	116	+	15.48	CCCCACCC
MLT1H	ZKSCAN3	125	138	-	15.41	ACAAGGCCAGCCCA
MLT1H	PK08602.1	243	250	+	15.41	CCACCGCC
MLT1H	ZKSCAN3	262	275	+	15.37	CCCGGGCTAGCCTG
MLT1H	MYCN	291	298	+	15.35	CCACGTGG

1 2 3 4 5 ... 42

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).