MLT1G3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001013 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 595 |
| Kimura value | 25.91 |
| Tau index | 0.9807 |
| Description | MLT1G3 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGATTGTATTTTCCAAAGATGGCCGCAACAATATCTCCCATCCCACATGCTCTTCTTACAATGTGACCTTGACACTCCTCCCATCGAGAGGTGGGGTCTATGTCCCCTCCCCTTGAATCTGGGCGGGCCTTTGTGACTGCCTCGACCAATAGAATACGGCGGAAGTGACGCTGTGTGACTTCCGAGGCTAGGTCATAAAAAGGCCATGCAGCTTCCGCCTTGCTCTCTTGGGACGCTCGCTCTTGGAACCCAGCCGCCATGCTGTGAGGAAGCCCAAGCCACATGGAGAGGCCACGTGTAGGTGTTCCGGCCGACAGCCCCAGCTGAGGTCCCAGCCGACAGCCAGCATCAACCGCCAGACATGTGAGTGAAGAAGCCTCCAGATGATTCCAGCCCCCAGCCGTCGAGTCACCCCCAGCCTTCGAGTCTTCCCAGCTGAGGCCCCAGACATCGTGGAGCAGAGACAAGCCATCCCCGCTGTGCCCTGTCCGAATTCCTGACCCACAGAATCCGTGAGCATAATAAAATGGTTGTTTTANGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGGAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1G3 | Fer1 | 323 | 335 | + | 1.82 | GCCCCAGCTGAGG |
| MLT1G3 | Rxra | 70 | 83 | - | 1.72 | GAGTGTCAAGGTCA |
| MLT1G3 | Fer1 | 435 | 447 | + | 1.69 | TTCCCAGCTGAGG |
| MLT1G3 | ESR1 | 67 | 81 | - | -0.71 | GTGTCAAGGTCACAT |
| MLT1G3 | DAL81 | 393 | 411 | - | -52.00 | GACGGCTGGGGGCTGGAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
