MLT1G3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001013 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 595 |
| Kimura value | 25.91 |
| Tau index | 0.9807 |
| Description | MLT1G3 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGCAGATTGTATTTTCCAAAGATGGCCGCAACAATATCTCCCATCCCACATGCTCTTCTTACAATGTGACCTTGACACTCCTCCCATCGAGAGGTGGGGTCTATGTCCCCTCCCCTTGAATCTGGGCGGGCCTTTGTGACTGCCTCGACCAATAGAATACGGCGGAAGTGACGCTGTGTGACTTCCGAGGCTAGGTCATAAAAAGGCCATGCAGCTTCCGCCTTGCTCTCTTGGGACGCTCGCTCTTGGAACCCAGCCGCCATGCTGTGAGGAAGCCCAAGCCACATGGAGAGGCCACGTGTAGGTGTTCCGGCCGACAGCCCCAGCTGAGGTCCCAGCCGACAGCCAGCATCAACCGCCAGACATGTGAGTGAAGAAGCCTCCAGATGATTCCAGCCCCCAGCCGTCGAGTCACCCCCAGCCTTCGAGTCTTCCCAGCTGAGGCCCCAGACATCGTGGAGCAGAGACAAGCCATCCCCGCTGTGCCCTGTCCGAATTCCTGACCCACAGAATCCGTGAGCATAATAAAATGGTTGTTTTANGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGGAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1G3 | PK24205.1 | 297 | 304 | - | 14.62 | CACGTGGC |
| MLT1G3 | BHLH72 | 297 | 305 | + | 14.57 | GCCACGTGT |
| MLT1G3 | DPBF3 | 296 | 306 | + | 14.54 | GGCCACGTGTA |
| MLT1G3 | EmBP-1 | 298 | 305 | - | 14.49 | ACACGTGG |
| MLT1G3 | HLH4C | 435 | 448 | - | 14.36 | GCCTCAGCTGGGAA |
| MLT1G3 | BZR2 | 296 | 305 | - | 14.34 | ACACGTGGCC |
| MLT1G3 | Eip75B | 504 | 513 | - | 14.31 | CTGTGGGTCA |
| MLT1G3 | Mnt | 298 | 304 | + | 14.31 | CCACGTG |
| MLT1G3 | SP2 | 110 | 118 | - | 14.29 | GGGGAGGGG |
| MLT1G3 | HOXC11 | 196 | 206 | + | 14.29 | AGGTCATAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
