MLT1G3

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001013
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	595
Kimura value	25.91
Tau index	0.9807
Description	MLT1G3 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGCAGATTGTATTTTCCAAAGATGGCCGCAACAATATCTCCCATCCCACATGCTCTTCTTACAATGTGACCTTGACACTCCTCCCATCGAGAGGTGGGGTCTATGTCCCCTCCCCTTGAATCTGGGCGGGCCTTTGTGACTGCCTCGACCAATAGAATACGGCGGAAGTGACGCTGTGTGACTTCCGAGGCTAGGTCATAAAAAGGCCATGCAGCTTCCGCCTTGCTCTCTTGGGACGCTCGCTCTTGGAACCCAGCCGCCATGCTGTGAGGAAGCCCAAGCCACATGGAGAGGCCACGTGTAGGTGTTCCGGCCGACAGCCCCAGCTGAGGTCCCAGCCGACAGCCAGCATCAACCGCCAGACATGTGAGTGAAGAAGCCTCCAGATGATTCCAGCCCCCAGCCGTCGAGTCACCCCCAGCCTTCGAGTCTTCCCAGCTGAGGCCCCAGACATCGTGGAGCAGAGACAAGCCATCCCCGCTGTGCCCTGTCCGAATTCCTGACCCACAGAATCCGTGAGCATAATAAAATGGTTGTTTTANGCCACTAAGTTTTGGGGTGGTTTGTTACGCAGCAATAGATAACTGGAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1G3	HOXD10	197	206	+	15.36	GGTCATAAAA
MLT1G3	FEZF2	420	427	+	15.03	CCCAGCCT
MLT1G3	ETV7	165	173	+	15.00	GCGGAAGTG
MLT1G3	bHLH77	294	305	+	14.83	GAGGCCACGTGT
MLT1G3	PIF4	297	304	-	14.80	CACGTGGC
MLT1G3	ERR	70	77	-	14.77	CAAGGTCA
MLT1G3	OJ1058_F05.8	298	305	-	14.66	ACACGTGG
MLT1G3	Os05g0437700	298	305	+	14.66	CCACGTGT
MLT1G3	KLF15	127	134	-	14.65	GCCCGCCC
MLT1G3	ftz-f1	71	78	+	14.63	GACCTTGA

1 2 3 4 5 6 ... 44

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).