MLT1F2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001010 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 560 |
| Kimura value | 23.89 |
| Tau index | 0.9445 |
| Description | MLT1F2 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1F2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGGCAGCCTCTAAGATGGCCCCCAATGATCCCCGCCTCCTGGTATTCACGCCCTTGTGTAATCCCCTCCCCTTGAGTGTGGGCTGGACCTAGTGACTCGCTTCTAACGAATAGAATACGGCAAAAGTGATGGGATGTCACTTCCGAGATTAGGTTACAAAAAGACTGTGGCTTCCGTCTTGCGCGCCCTCTCTTGCTCTCTCGCTTGCTCGCTCTGANGGAAGCNAGCTGCCATGTTGTGAGCTGCCCTATGGAGAGGCCCACGTGGCAAGGAACTGAGGGCGGCCTCCGGCCAACAGCCAGCGAGGAACTGAGNCCTGCCAACAACCACGTGAGTGAGCTTGGAAGCGGATCCTCCCCCAGTCGAGCCTTNAGATGACCGCAGCCCCGGCCGACACCTTGATTGCAGCCTCGTGAGAGACCCTGAGCCAGAGGCACCCAGCTAAGCCGCGCCCGGATTCCTGACCCACAGAAACTGTGAGATAATAAATGTNTGTTGTTTTAAGCCGCTAAGTTTTGGGGTAATTTGTTACGCAGCAATAGATAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1F2 | DAL81 | 448 | 466 | + | -52.00 | CTAAGCCGCGCCCGGATTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
