MLT1F2

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001010
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	560
Kimura value	23.89
Tau index	0.9445
Description	MLT1F2 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1F2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGGCAGCCTCTAAGATGGCCCCCAATGATCCCCGCCTCCTGGTATTCACGCCCTTGTGTAATCCCCTCCCCTTGAGTGTGGGCTGGACCTAGTGACTCGCTTCTAACGAATAGAATACGGCAAAAGTGATGGGATGTCACTTCCGAGATTAGGTTACAAAAAGACTGTGGCTTCCGTCTTGCGCGCCCTCTCTTGCTCTCTCGCTTGCTCGCTCTGANGGAAGCNAGCTGCCATGTTGTGAGCTGCCCTATGGAGAGGCCCACGTGGCAAGGAACTGAGGGCGGCCTCCGGCCAACAGCCAGCGAGGAACTGAGNCCTGCCAACAACCACGTGAGTGAGCTTGGAAGCGGATCCTCCCCCAGTCGAGCCTTNAGATGACCGCAGCCCCGGCCGACACCTTGATTGCAGCCTCGTGAGAGACCCTGAGCCAGAGGCACCCAGCTAAGCCGCGCCCGGATTCCTGACCCACAGAAACTGTGAGATAATAAATGTNTGTTGTTTTAAGCCGCTAAGTTTTGGGGTAATTTGTTACGCAGCAATAGATAACTAATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1F2	BZIP16	266	275	+	17.23	CCACGTGGCA
MLT1F2	Clamp	203	216	-	17.12	GAGCAAGCGAGAGA
MLT1F2	ABF1	266	275	+	16.72	CCACGTGGCA
MLT1F2	BHLH72	266	274	-	16.71	GCCACGTGG
MLT1F2	ZNF148	69	78	+	16.10	CCCCTCCCCT
MLT1F2	MAZ	69	76	+	16.08	CCCCTCCC
MLT1F2	SP1	69	77	-	16.06	GGGGAGGGG
MLT1F2	BZIP68	266	275	-	15.97	TGCCACGTGG
MLT1F2	SP4	69	77	-	15.85	GGGGAGGGG
MLT1F2	KLF3	451	460	+	15.53	AGCCGCGCCC

1 2 3 4 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).