MLT1F2

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001010
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	560
Kimura value	23.89
Tau index	0.9445
Description	MLT1F2 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1F2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGGCAGCCTCTAAGATGGCCCCCAATGATCCCCGCCTCCTGGTATTCACGCCCTTGTGTAATCCCCTCCCCTTGAGTGTGGGCTGGACCTAGTGACTCGCTTCTAACGAATAGAATACGGCAAAAGTGATGGGATGTCACTTCCGAGATTAGGTTACAAAAAGACTGTGGCTTCCGTCTTGCGCGCCCTCTCTTGCTCTCTCGCTTGCTCGCTCTGANGGAAGCNAGCTGCCATGTTGTGAGCTGCCCTATGGAGAGGCCCACGTGGCAAGGAACTGAGGGCGGCCTCCGGCCAACAGCCAGCGAGGAACTGAGNCCTGCCAACAACCACGTGAGTGAGCTTGGAAGCGGATCCTCCCCCAGTCGAGCCTTNAGATGACCGCAGCCCCGGCCGACACCTTGATTGCAGCCTCGTGAGAGACCCTGAGCCAGAGGCACCCAGCTAAGCCGCGCCCGGATTCCTGACCCACAGAAACTGTGAGATAATAAATGTNTGTTGTTTTAAGCCGCTAAGTTTTGGGGTAATTTGTTACGCAGCAATAGATAACTAATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1F2	BZIP28	266	275	+	14.56	CCACGTGGCA
MLT1F2	PIF5	333	340	-	14.49	TCACGTGG
MLT1F2	GLYMA-13G317000	268	275	+	14.44	ACGTGGCA
MLT1F2	BZIP3	263	275	+	14.42	GGCCCACGTGGCA
MLT1F2	GLYMA-06G314400	268	275	+	14.40	ACGTGGCA
MLT1F2	E(spl)m3-HLH	267	275	+	14.34	CACGTGGCA
MLT1F2	KLF12	36	44	-	14.34	GAGGCGGGG
MLT1F2	mxl-1	266	273	+	14.33	CCACGTGG
MLT1F2	mxl-1	266	273	-	14.33	CCACGTGG
MLT1F2	Eip75B	468	477	-	14.31	CTGTGGGTCA

1 2 3 4 5 6 7 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).