MLT1F2

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001010
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	560
Kimura value	23.89
Tau index	0.9445
Description	MLT1F2 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1F2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGGCAGCCTCTAAGATGGCCCCCAATGATCCCCGCCTCCTGGTATTCACGCCCTTGTGTAATCCCCTCCCCTTGAGTGTGGGCTGGACCTAGTGACTCGCTTCTAACGAATAGAATACGGCAAAAGTGATGGGATGTCACTTCCGAGATTAGGTTACAAAAAGACTGTGGCTTCCGTCTTGCGCGCCCTCTCTTGCTCTCTCGCTTGCTCGCTCTGANGGAAGCNAGCTGCCATGTTGTGAGCTGCCCTATGGAGAGGCCCACGTGGCAAGGAACTGAGGGCGGCCTCCGGCCAACAGCCAGCGAGGAACTGAGNCCTGCCAACAACCACGTGAGTGAGCTTGGAAGCGGATCCTCCCCCAGTCGAGCCTTNAGATGACCGCAGCCCCGGCCGACACCTTGATTGCAGCCTCGTGAGAGACCCTGAGCCAGAGGCACCCAGCTAAGCCGCGCCCGGATTCCTGACCCACAGAAACTGTGAGATAATAAATGTNTGTTGTTTTAAGCCGCTAAGTTTTGGGGTAATTTGTTACGCAGCAATAGATAACTAATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1F2	DPBF3	265	275	-	15.11	TGCCACGTGGG
MLT1F2	SP2	36	44	-	14.98	GAGGCGGGG
MLT1F2	Usf	265	274	+	14.87	CCCACGTGGC
MLT1F2	PIF4	267	274	+	14.80	CACGTGGC
MLT1F2	GBF3	268	275	+	14.70	ACGTGGCA
MLT1F2	BZIP2	263	275	+	14.67	GGCCCACGTGGCA
MLT1F2	Clamp	195	208	-	14.65	GAGAGAGCAAGAGA
MLT1F2	PK24205.1	267	274	+	14.62	CACGTGGC
MLT1F2	mxl-3	266	273	+	14.59	CCACGTGG
MLT1F2	mxl-3	266	273	-	14.59	CCACGTGG

1 2 3 4 5 6 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).