MLT1F2

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001010
TE superfamily	MaLR
TE order	LTR
Species	Eutheria
Length	560
Kimura value	23.89
Tau index	0.9445
Description	MLT1F2 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1F2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGGCAGCCTCTAAGATGGCCCCCAATGATCCCCGCCTCCTGGTATTCACGCCCTTGTGTAATCCCCTCCCCTTGAGTGTGGGCTGGACCTAGTGACTCGCTTCTAACGAATAGAATACGGCAAAAGTGATGGGATGTCACTTCCGAGATTAGGTTACAAAAAGACTGTGGCTTCCGTCTTGCGCGCCCTCTCTTGCTCTCTCGCTTGCTCGCTCTGANGGAAGCNAGCTGCCATGTTGTGAGCTGCCCTATGGAGAGGCCCACGTGGCAAGGAACTGAGGGCGGCCTCCGGCCAACAGCCAGCGAGGAACTGAGNCCTGCCAACAACCACGTGAGTGAGCTTGGAAGCGGATCCTCCCCCAGTCGAGCCTTNAGATGACCGCAGCCCCGGCCGACACCTTGATTGCAGCCTCGTGAGAGACCCTGAGCCAGAGGCACCCAGCTAAGCCGCGCCCGGATTCCTGACCCACAGAAACTGTGAGATAATAAATGTNTGTTGTTTTAAGCCGCTAAGTTTTGGGGTAATTTGTTACGCAGCAATAGATAACTAATACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1F2	BHLH72	265	273	+	15.53	CCCACGTGG
MLT1F2	Usf	332	341	+	15.48	ACCACGTGAG
MLT1F2	OsbZIP69	264	275	+	15.44	GCCCACGTGGCA
MLT1F2	Wt1	359	368	+	15.43	CCTCCCCCAG
MLT1F2	MYCN	266	273	+	15.35	CCACGTGG
MLT1F2	MYCN	266	273	-	15.35	CCACGTGG
MLT1F2	GBF2	267	275	+	15.33	CACGTGGCA
MLT1F2	Creb3l2	266	274	-	15.25	GCCACGTGG
MLT1F2	dm	332	339	+	15.13	ACCACGTG
MLT1F2	Max	332	339	+	15.13	ACCACGTG

1 2 3 4 5 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).