MLT1E1A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001128 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Eutheria |
| Length | 680 |
| Kimura value | 23.96 |
| Tau index | 0.9809 |
| Description | MLT1E1A Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGGCAGAATTCTAAGATGGCCCCCAAGATTCCCGCCCCCTGGTGTACACGCCCTGTATAATCCCCTCCCCTTGAGTGTGGGCGGGACCTGTGAATATGATGGGATATCACTCCCGTGATTAGGTTACATTATATGGCAAAGGTGAAGGGATTTTGCAGATGTAATTAAGGTCCCTAATCAGTTGACTTTGAGTTAATCAAAAGGGAGATTATCCTGGGTGGGCCTGACCTAATCAGGTGAGCCCTTAAAAGAGGCATGGGCCCTCCAGAGAGAAGAACAGAGAGATTCTCCTGCTGGCCTTGAAGAAGCAAGCTGCCATGTTGTGAGAGGGCCTATGGAGAGGGCCACGTGGCAAGGANCTGNGGGCGGCCTCTAGGAGCTGAGAGCGGCCCCCGGCCGACAGCCAGCAAGAAAACGGGGACCTCAGTCCTACAGCCGCAAGGAANTGAATTCTGCCAACAACCTGAATGAGCTTGGAAGNGGACCCTAAGCCTCAGATGAGAACGCAGCCCTAGCCGACACCTTGATTNCAGCCTTGTGAGACCCTGAGCAGAGGACCCAGCTAAGCCGTGCCCGGACTCCTGACCCACAGAAACTGTGAGATAATAAATGTGTGTTGTTTTAAGCCGCTAAGTTTGTGGTAATTTGTTACGCAGCAATAGAAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1E1A | NR1H2::RXRA | 137 | 153 | + | -3.45 | ATATGGCAAAGGTGAAG |
| MLT1E1A | DAL81 | 34 | 52 | - | -39.14 | TACACCAGGGGGCGGGAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
