MLT1E1A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001128 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 680 |
| Kimura value | 23.96 |
| Tau index | 0.9809 |
| Description | MLT1E1A Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGGCAGAATTCTAAGATGGCCCCCAAGATTCCCGCCCCCTGGTGTACACGCCCTGTATAATCCCCTCCCCTTGAGTGTGGGCGGGACCTGTGAATATGATGGGATATCACTCCCGTGATTAGGTTACATTATATGGCAAAGGTGAAGGGATTTTGCAGATGTAATTAAGGTCCCTAATCAGTTGACTTTGAGTTAATCAAAAGGGAGATTATCCTGGGTGGGCCTGACCTAATCAGGTGAGCCCTTAAAAGAGGCATGGGCCCTCCAGAGAGAAGAACAGAGAGATTCTCCTGCTGGCCTTGAAGAAGCAAGCTGCCATGTTGTGAGAGGGCCTATGGAGAGGGCCACGTGGCAAGGANCTGNGGGCGGCCTCTAGGAGCTGAGAGCGGCCCCCGGCCGACAGCCAGCAAGAAAACGGGGACCTCAGTCCTACAGCCGCAAGGAANTGAATTCTGCCAACAACCTGAATGAGCTTGGAAGNGGACCCTAAGCCTCAGATGAGAACGCAGCCCTAGCCGACACCTTGATTNCAGCCTTGTGAGACCCTGAGCAGAGGACCCAGCTAAGCCGTGCCCGGACTCCTGACCCACAGAAACTGTGAGATAATAAATGTGTGTTGTTTTAAGCCGCTAAGTTTGTGGTAATTTGTTACGCAGCAATAGAAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1E1A | CrebA | 349 | 360 | + | 19.72 | GGCCACGTGGCA |
| MLT1E1A | CrebA | 349 | 360 | - | 19.72 | TGCCACGTGGCC |
| MLT1E1A | DPBF3 | 350 | 360 | - | 18.56 | TGCCACGTGGC |
| MLT1E1A | HY5 | 349 | 360 | + | 18.21 | GGCCACGTGGCA |
| MLT1E1A | HY5 | 349 | 360 | - | 18.21 | TGCCACGTGGCC |
| MLT1E1A | CTCF | 38 | 52 | - | 17.51 | TACACCAGGGGGCGG |
| MLT1E1A | ZmbZIP96 | 350 | 360 | + | 17.44 | GCCACGTGGCA |
| MLT1E1A | BZIP16 | 351 | 360 | + | 17.23 | CCACGTGGCA |
| MLT1E1A | ABF1 | 351 | 360 | + | 16.72 | CCACGTGGCA |
| MLT1E1A | BHLH72 | 350 | 358 | + | 16.71 | GCCACGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
