MLT1E1A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001128 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Eutheria |
| Length | 680 |
| Kimura value | 23.96 |
| Tau index | 0.9809 |
| Description | MLT1E1A Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGGCAGAATTCTAAGATGGCCCCCAAGATTCCCGCCCCCTGGTGTACACGCCCTGTATAATCCCCTCCCCTTGAGTGTGGGCGGGACCTGTGAATATGATGGGATATCACTCCCGTGATTAGGTTACATTATATGGCAAAGGTGAAGGGATTTTGCAGATGTAATTAAGGTCCCTAATCAGTTGACTTTGAGTTAATCAAAAGGGAGATTATCCTGGGTGGGCCTGACCTAATCAGGTGAGCCCTTAAAAGAGGCATGGGCCCTCCAGAGAGAAGAACAGAGAGATTCTCCTGCTGGCCTTGAAGAAGCAAGCTGCCATGTTGTGAGAGGGCCTATGGAGAGGGCCACGTGGCAAGGANCTGNGGGCGGCCTCTAGGAGCTGAGAGCGGCCCCCGGCCGACAGCCAGCAAGAAAACGGGGACCTCAGTCCTACAGCCGCAAGGAANTGAATTCTGCCAACAACCTGAATGAGCTTGGAAGNGGACCCTAAGCCTCAGATGAGAACGCAGCCCTAGCCGACACCTTGATTNCAGCCTTGTGAGACCCTGAGCAGAGGACCCAGCTAAGCCGTGCCCGGACTCCTGACCCACAGAAACTGTGAGATAATAAATGTGTGTTGTTTTAAGCCGCTAAGTTTGTGGTAATTTGTTACGCAGCAATAGAAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1E1A | WRKY70 | 186 | 195 | + | 15.56 | AGTTGACTTT |
| MLT1E1A | WRKY21 | 186 | 196 | - | 15.53 | CAAAGTCAACT |
| MLT1E1A | WRKY11 | 186 | 196 | + | 15.50 | AGTTGACTTTG |
| MLT1E1A | MYCN | 351 | 358 | + | 15.35 | CCACGTGG |
| MLT1E1A | MYCN | 351 | 358 | - | 15.35 | CCACGTGG |
| MLT1E1A | Six3 | 105 | 115 | + | 15.33 | ATGGGATATCA |
| MLT1E1A | GBF2 | 352 | 360 | + | 15.33 | CACGTGGCA |
| MLT1E1A | E2F6 | 35 | 42 | - | 15.29 | GGCGGGAA |
| MLT1E1A | Creb3l2 | 350 | 358 | + | 15.25 | GCCACGTGG |
| MLT1E1A | Creb3l2 | 351 | 359 | - | 15.25 | GCCACGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
