MLT1E1A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001128 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 680 |
| Kimura value | 23.96 |
| Tau index | 0.9809 |
| Description | MLT1E1A Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTGGTAGGCAGAATTCTAAGATGGCCCCCAAGATTCCCGCCCCCTGGTGTACACGCCCTGTATAATCCCCTCCCCTTGAGTGTGGGCGGGACCTGTGAATATGATGGGATATCACTCCCGTGATTAGGTTACATTATATGGCAAAGGTGAAGGGATTTTGCAGATGTAATTAAGGTCCCTAATCAGTTGACTTTGAGTTAATCAAAAGGGAGATTATCCTGGGTGGGCCTGACCTAATCAGGTGAGCCCTTAAAAGAGGCATGGGCCCTCCAGAGAGAAGAACAGAGAGATTCTCCTGCTGGCCTTGAAGAAGCAAGCTGCCATGTTGTGAGAGGGCCTATGGAGAGGGCCACGTGGCAAGGANCTGNGGGCGGCCTCTAGGAGCTGAGAGCGGCCCCCGGCCGACAGCCAGCAAGAAAACGGGGACCTCAGTCCTACAGCCGCAAGGAANTGAATTCTGCCAACAACCTGAATGAGCTTGGAAGNGGACCCTAAGCCTCAGATGAGAACGCAGCCCTAGCCGACACCTTGATTNCAGCCTTGTGAGACCCTGAGCAGAGGACCCAGCTAAGCCGTGCCCGGACTCCTGACCCACAGAAACTGTGAGATAATAAATGTGTGTTGTTTTAAGCCGCTAAGTTTGTGGTAATTTGTTACGCAGCAATAGAAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1E1A | BHLH72 | 351 | 359 | - | 16.71 | GCCACGTGG |
| MLT1E1A | WRKY22 | 186 | 195 | - | 16.70 | AAAGTCAACT |
| MLT1E1A | WRKY27 | 186 | 196 | + | 16.55 | AGTTGACTTTG |
| MLT1E1A | DUX4 | 122 | 132 | - | 16.53 | TAACCTAATCA |
| MLT1E1A | DPBF3 | 349 | 359 | + | 16.34 | GGCCACGTGGC |
| MLT1E1A | ZNF148 | 68 | 77 | + | 16.10 | CCCCTCCCCT |
| MLT1E1A | MAZ | 68 | 75 | + | 16.08 | CCCCTCCC |
| MLT1E1A | SP1 | 68 | 76 | - | 16.06 | GGGGAGGGG |
| MLT1E1A | WRKY7 | 186 | 196 | + | 16.06 | AGTTGACTTTG |
| MLT1E1A | WRKY71 | 187 | 196 | - | 16.00 | CAAAGTCAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
