MLT1C2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001221 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 461 |
| Kimura value | 21.32 |
| Tau index | 0.8666 |
| Description | Mammalian long terminal repeat (MLT1C subfamily) |
| Comment | Specific to boreoeutherians. |
| Sequence |
TGTTGTGGGTTGAATTGTGTCCCCCAAAAAGATATGTTCAAGTCCTAACCCCCGGNACCTGTGAATGTGACCTTATTTGGAAATAGGGTCTTTGCAGATGTAATCAAGTTAAGATGAGGTCATACTGGATTAGGGTGGGCCCTAATCCAATGACTGGTGTCCTTATAAGAAGAGGGAAATNTGGACACAGAGACACACAGGGAGAAGGCCATGTGAAGACGGAGGCAGAGATTGGAGTGATGCGGCTACAAGCCAAGGAACGCCAAGGATTGCCGGCAACCACCAGAAGCTAGGAAGAGGCAAGGAAGGATTCTCCCCTAGAGCCTTCAGAGGGAGCACGGCCCTGCCGACACCTTGATTTCGGACTTCTGGCCTCCAGAACTGTGAGAGAATAAATTTCTGTTGTTTTAAGCCACCCAGTTTGTGGTANTTTGTTACGGCAGCCCTAGGAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1C2 | TCP21 | 135 | 145 | + | 14.73 | GTGGGCCCTAA |
| MLT1C2 | ZNF418 | 404 | 418 | - | 14.56 | GGGTGGCTTAAAACA |
| MLT1C2 | TCP16 | 135 | 142 | + | 14.51 | GTGGGCCC |
| MLT1C2 | INO4 | 209 | 217 | + | 14.43 | CCATGTGAA |
| MLT1C2 | ERF025 | 345 | 352 | + | 14.41 | TGCCGACA |
| MLT1C2 | SEP1 | 71 | 83 | + | 14.34 | CCTTATTTGGAAA |
| MLT1C2 | ZBTB26 | 374 | 381 | + | 14.32 | CTCCAGAA |
| MLT1C2 | TCP22 | 135 | 145 | + | 14.30 | GTGGGCCCTAA |
| MLT1C2 | ZNF257 | 297 | 306 | + | 14.22 | GAGGCAAGGA |
| MLT1C2 | EcR | 116 | 123 | + | 14.10 | GAGGTCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
