MLT1C2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001221 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Eutheria |
| Length | 461 |
| Kimura value | 21.32 |
| Tau index | 0.8666 |
| Description | Mammalian long terminal repeat (MLT1C subfamily) |
| Comment | Specific to boreoeutherians. |
| Sequence |
TGTTGTGGGTTGAATTGTGTCCCCCAAAAAGATATGTTCAAGTCCTAACCCCCGGNACCTGTGAATGTGACCTTATTTGGAAATAGGGTCTTTGCAGATGTAATCAAGTTAAGATGAGGTCATACTGGATTAGGGTGGGCCCTAATCCAATGACTGGTGTCCTTATAAGAAGAGGGAAATNTGGACACAGAGACACACAGGGAGAAGGCCATGTGAAGACGGAGGCAGAGATTGGAGTGATGCGGCTACAAGCCAAGGAACGCCAAGGATTGCCGGCAACCACCAGAAGCTAGGAAGAGGCAAGGAAGGATTCTCCCCTAGAGCCTTCAGAGGGAGCACGGCCCTGCCGACACCTTGATTTCGGACTTCTGGCCTCCAGAACTGTGAGAGAATAAATTTCTGTTGTTTTAAGCCACCCAGTTTGTGGTANTTTGTTACGGCAGCCCTAGGAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1C2 | ARALYDRAFT_484486 | 135 | 142 | - | 15.43 | GGGCCCAC |
| MLT1C2 | VIT_15s0048g01150 | 135 | 142 | - | 15.13 | GGGCCCAC |
| MLT1C2 | SUT2 | 360 | 369 | - | 15.00 | GAAGTCCGAA |
| MLT1C2 | ZNF692 | 135 | 142 | - | 15.00 | GGGCCCAC |
| MLT1C2 | EREB127 | 345 | 352 | + | 14.97 | TGCCGACA |
| MLT1C2 | AGL1 | 68 | 83 | - | 14.93 | TTTCCAAATAAGGTCA |
| MLT1C2 | AGL1 | 68 | 83 | + | 14.85 | TGACCTTATTTGGAAA |
| MLT1C2 | Glyma19g26560.1 | 135 | 142 | - | 14.75 | GGGCCCAC |
| MLT1C2 | GLYMA19G26560 | 135 | 142 | - | 14.75 | GGGCCCAC |
| MLT1C2 | DREB1G | 345 | 352 | + | 14.74 | TGCCGACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
