MLT1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001127 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Boreoeutheria |
| Length | 390 |
| Kimura value | 19.62 |
| Tau index | 0.8578 |
| Description | MLT1B Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1B (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGTTATGGGCTGAATTGTGTCCCCCCAAAATTCATATGTTGAAGTCCTAACCCCCAGTACCTCAGAATGTGACTGTATTTGGAGATAGGGCCTTTAAAGAGGTAATTAAGTTAAAATGAGGTCATTAGGGTGGGCCCTAATCCAATATGACTGGTGTCCTTATAAGAAGAGGAGATTAGGACACAGACACGCACAGAGGGAAGACCATGTGAGGACACAGGGAGAAGGCGGCCATCTGCAAGCCAAGGAGAGAGGCCTCAGAAGAAACCAACCCTGCCGACACCTTGATCTCGGACTTCCAGCCTCCAGAACTGTGAGAAAATAAATTTCTGTTGTTTAAGCCACCCAGTCTGTGGTACTTTGTTATGGCAGCCCTAGCAAACTAATACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1B | NTL8 | 261 | 268 | + | 14.41 | GAAGAAAC |
| MLT1B | ERF025 | 275 | 282 | + | 14.41 | TGCCGACA |
| MLT1B | ZBTB26 | 304 | 311 | + | 14.32 | CTCCAGAA |
| MLT1B | TCP22 | 130 | 140 | + | 14.30 | GTGGGCCCTAA |
| MLT1B | SUT2 | 290 | 299 | - | 14.26 | GAAGTCCGAG |
| MLT1B | EcR | 118 | 125 | + | 14.10 | GAGGTCAT |
| MLT1B | ZNF766 | 262 | 270 | + | 14.08 | AAGAAACCA |
| MLT1B | PROP1 | 103 | 113 | - | 14.01 | TAACTTAATTA |
| MLT1B | DUXA | 102 | 114 | + | 14.00 | GTAATTAAGTTAA |
| MLT1B | ZHD9 | 103 | 117 | - | 13.99 | ATTTTAACTTAATTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
