MLT1A0
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001001 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Euarchontoglires |
| Length | 365 |
| Kimura value | 19.02 |
| Tau index | 0.8692 |
| Description | MLT1A0 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1A0 (Mammalian LTR Transposon) has 5 bp TSDs. This represents a minor variant of MLT1A, differing primarily by an 11bp indel. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTCTGAATGTTTGTGTCCCCCCAAAATTCATATGTTGAAACCTAACCCCCAANGTGATGGTATTAGGAGGTGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGATTAGTGCCCTTATAAAAGAGGCCCCAGAGAGCTCCCTCGCCCCTTCCGCCATGTGAGGACACAGCGAGAAGGCGCCGTCTATGAACCAGGAAGCGGGCCCTCACCAGACACCGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTGTTTATAAGCCACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1A0 | TCP23 | 77 | 84 | - | 13.11 | GGCCCCAC |
| MLT1A0 | KLF5 | 107 | 116 | - | 13.10 | GCTCCGCCCT |
| MLT1A0 | PIF5 | 179 | 186 | - | 13.10 | TCACATGG |
| MLT1A0 | Atoh1 | 36 | 43 | - | 13.08 | AACATATG |
| MLT1A0 | ARF39 | 18 | 28 | - | 13.02 | GGGGGACACAA |
| MLT1A0 | Zfx | 76 | 85 | + | 12.97 | GGTGGGGCCT |
| MLT1A0 | ARR14 | 241 | 248 | - | 12.93 | AGATTCGG |
| MLT1A0 | NR6A1 | 259 | 272 | - | 12.92 | GAAGTCCAAGATCA |
| MLT1A0 | FOXJ2::ELF1 | 214 | 224 | + | 12.90 | AACCAGGAAGC |
| MLT1A0 | slp2 | 306 | 313 | - | 12.84 | ATAAACAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
