MLT1A0
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001001 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Euarchontoglires |
| Length | 365 |
| Kimura value | 19.02 |
| Tau index | 0.8692 |
| Description | MLT1A0 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1A0 (Mammalian LTR Transposon) has 5 bp TSDs. This represents a minor variant of MLT1A, differing primarily by an 11bp indel. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTCTGAATGTTTGTGTCCCCCCAAAATTCATATGTTGAAACCTAACCCCCAANGTGATGGTATTAGGAGGTGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGATTAGTGCCCTTATAAAAGAGGCCCCAGAGAGCTCCCTCGCCCCTTCCGCCATGTGAGGACACAGCGAGAAGGCGCCGTCTATGAACCAGGAAGCGGGCCCTCACCAGACACCGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTGTTTATAAGCCACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1A0 | Zfp809 | 270 | 278 | + | 15.73 | TTCCCAGCC |
| MLT1A0 | ARALYDRAFT_495258 | 77 | 84 | - | 15.43 | GGCCCCAC |
| MLT1A0 | ARALYDRAFT_484486 | 77 | 84 | - | 15.43 | GGCCCCAC |
| MLT1A0 | Spps | 106 | 116 | - | 15.38 | GCTCCGCCCTC |
| MLT1A0 | PATZ1 | 73 | 83 | + | 15.04 | GGAGGTGGGGC |
| MLT1A0 | FEZF2 | 272 | 279 | + | 15.03 | CCCAGCCT |
| MLT1A0 | ARALYDRAFT_493022 | 77 | 84 | - | 14.64 | GGCCCCAC |
| MLT1A0 | AS2 | 238 | 255 | - | 14.59 | CGCCGGCAGATTCGGTGT |
| MLT1A0 | ZBTB26 | 278 | 285 | + | 14.32 | CTCCAGAA |
| MLT1A0 | ZKSCAN5 | 89 | 97 | + | 14.28 | GGAGGTGAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
