MLT1A0
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001001 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Euarchontoglires |
| Length | 365 |
| Kimura value | 19.02 |
| Tau index | 0.8692 |
| Description | MLT1A0 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1A0 (Mammalian LTR Transposon) has 5 bp TSDs. This represents a minor variant of MLT1A, differing primarily by an 11bp indel. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTCTGAATGTTTGTGTCCCCCCAAAATTCATATGTTGAAACCTAACCCCCAANGTGATGGTATTAGGAGGTGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGATTAGTGCCCTTATAAAAGAGGCCCCAGAGAGCTCCCTCGCCCCTTCCGCCATGTGAGGACACAGCGAGAAGGCGCCGTCTATGAACCAGGAAGCGGGCCCTCACCAGACACCGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTGTTTATAAGCCACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1A0 | YY2 | 176 | 182 | - | 13.54 | ATGGCGG |
| MLT1A0 | btd | 106 | 114 | + | 13.48 | GAGGGCGGA |
| MLT1A0 | Foxq1 | 305 | 314 | + | 13.47 | GTTGTTTATA |
| MLT1A0 | TCP19 | 77 | 84 | - | 13.44 | GGCCCCAC |
| MLT1A0 | PITX2 | 127 | 134 | - | 13.40 | CTAATCCC |
| MLT1A0 | KLF7 | 108 | 115 | + | 13.34 | GGGCGGAG |
| MLT1A0 | brk | 250 | 257 | + | 13.31 | CCGGCGCC |
| MLT1A0 | OsRR22 | 240 | 248 | - | 13.28 | AGATTCGGT |
| MLT1A0 | sma-4 | 234 | 240 | - | 13.18 | TGTCTGG |
| MLT1A0 | VIT_15s0048g01150 | 77 | 84 | - | 13.13 | GGCCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
