MLT1A0
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001001 |
|---|---|
| TE superfamily | MaLR |
| TE order | LTR |
| Species | Euarchontoglires |
| Length | 365 |
| Kimura value | 19.02 |
| Tau index | 0.8692 |
| Description | MLT1A0 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1A0 (Mammalian LTR Transposon) has 5 bp TSDs. This represents a minor variant of MLT1A, differing primarily by an 11bp indel. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTCTGAATGTTTGTGTCCCCCCAAAATTCATATGTTGAAACCTAACCCCCAANGTGATGGTATTAGGAGGTGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGATTAGTGCCCTTATAAAAGAGGCCCCAGAGAGCTCCCTCGCCCCTTCCGCCATGTGAGGACACAGCGAGAAGGCGCCGTCTATGAACCAGGAAGCGGGCCCTCACCAGACACCGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTGTTTATAAGCCACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1A0 | PLAG1 | 79 | 92 | + | 4.40 | GGGGCCTTTGGGAG |
| MLT1A0 | NR2F6 | 106 | 120 | + | 4.25 | GAGGGCGGAGCCCTC |
| MLT1A0 | TRP2 | 38 | 58 | + | 2.21 | TATGTTGAAACCTAACCCCCA |
| MLT1A0 | Rarg | 98 | 112 | + | 1.34 | TAGGTCATGAGGGCG |
| MLT1A0 | Rarb | 97 | 112 | + | 0.05 | TTAGGTCATGAGGGCG |
| MLT1A0 | ZNF558 | 7 | 35 | - | -0.08 | AATTTTGGGGGGACACAAACATTCAGACC |
| MLT1A0 | E2F7 | 20 | 33 | + | -0.41 | GTGTCCCCCCAAAA |
| MLT1A0 | CG4360 | 330 | 342 | - | -0.46 | ATAACAAAATACC |
| MLT1A0 | TRP1 | 39 | 59 | + | -2.79 | ATGTTGAAACCTAACCCCCAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
