MLT1A0
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001001 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Euarchontoglires |
| Length | 365 |
| Kimura value | 19.02 |
| Tau index | 0.8692 |
| Description | MLT1A0 Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1A0 (Mammalian LTR Transposon) has 5 bp TSDs. This represents a minor variant of MLT1A, differing primarily by an 11bp indel. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGTCTGAATGTTTGTGTCCCCCCAAAATTCATATGTTGAAACCTAACCCCCAANGTGATGGTATTAGGAGGTGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGATTAGTGCCCTTATAAAAGAGGCCCCAGAGAGCTCCCTCGCCCCTTCCGCCATGTGAGGACACAGCGAGAAGGCGCCGTCTATGAACCAGGAAGCGGGCCCTCACCAGACACCGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTGTTTATAAGCCACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACGGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1A0 | Glyma19g26560.1 | 77 | 84 | - | 14.23 | GGCCCCAC |
| MLT1A0 | GLYMA19G26560 | 77 | 84 | - | 14.23 | GGCCCCAC |
| MLT1A0 | ZFP14 | 147 | 161 | + | 14.18 | AGAGGCCCCAGAGAG |
| MLT1A0 | LjSGA_053525.1 | 77 | 84 | - | 14.06 | GGCCCCAC |
| MLT1A0 | Ikzf3 | 217 | 225 | + | 14.00 | CAGGAAGCG |
| MLT1A0 | let-381 | 306 | 313 | - | 13.99 | ATAAACAA |
| MLT1A0 | ERF6 | 248 | 254 | + | 13.72 | TGCCGGC |
| MLT1A0 | Zm00001d049364 | 247 | 257 | + | 13.70 | CTGCCGGCGCC |
| MLT1A0 | PK24580.1 | 248 | 254 | - | 13.69 | GCCGGCA |
| MLT1A0 | SP4 | 107 | 115 | + | 13.65 | AGGGCGGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
