MER9a2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000970 |
|---|---|
| TE superfamily | ERV2 |
| TE order | LTR |
| Species | Catarrhini |
| Length | 513 |
| Kimura value | 3.85 |
| Tau index | 0.0000 |
| Description | MER9a2 Long Terminal Repeat for ERVK endogenous retrovirus |
| Comment | MER9a2 is a very minor variant of MER9a1. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTTGGGAACAGGCCCCCCAAAATCTGGCCATAAACTGGCCCCAAAACTGGCCATAAACAAAATCTCTGCAGCACTGTGACATGTTCATGATGGCCATAACGCCCACGCTGGAAGGTTGTGGGTTTACCGGAATGAGGGCAAGGAACACCTGGCCCGCCCAGGGCGGAAAACCGCTTAAAGGCATTCTTAAGCCACAAACAATAGCATGAGCGATCTGTGCCTTAAGGACATGCTCCTGCTGCAGNTAACTAGCCCAACCCATCCCTTTANTTCGGCCCATCCCTTCGTTTCCCATAAGGGATACTTTTAGTTAATCTAATATCTATAGAAACAATGCTAATGACTGGCTTGCTGTTAATAAATACGTGGGTAAATCTCTGTTCGGGGCTCTCAGCTCTGAAGGCTGTGAGACCCCTGATTTCCCACTTCACACCTCTATATTTCTGTGTGTGTGTCTTTAATTCCTCTAGCGCCGCTGGGTTAGGGTCTCCCCGACCGAGCTGGTCTCGGCA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER9a2 | KLF9 | 447 | 457 | - | 14.15 | GACACACACAC |
| MER9a2 | ZNF449 | 251 | 260 | + | 14.10 | TAGCCCAACC |
| MER9a2 | sens | 61 | 70 | + | 14.08 | AAATCTCTGC |
| MER9a2 | let-381 | 54 | 61 | + | 13.99 | ATAAACAA |
| MER9a2 | Zic1::Zic2 | 236 | 242 | - | 13.93 | CAGCAGG |
| MER9a2 | Tbx2/3 | 429 | 436 | - | 13.80 | AGGTGTGA |
| MER9a2 | TBX4 | 429 | 436 | - | 13.73 | AGGTGTGA |
| MER9a2 | Zic3 | 236 | 242 | - | 13.70 | CAGCAGG |
| MER9a2 | CHES-1-like | 53 | 62 | + | 13.65 | CATAAACAAA |
| MER9a2 | SoxN | 333 | 343 | - | 13.62 | CATTAGCATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
