MER9a2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000970 |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 513 |
| Kimura value | 3.85 |
| Tau index | 0.0000 |
| Description | MER9a2 Long Terminal Repeat for ERVK endogenous retrovirus |
| Comment | MER9a2 is a very minor variant of MER9a1. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTTGGGAACAGGCCCCCCAAAATCTGGCCATAAACTGGCCCCAAAACTGGCCATAAACAAAATCTCTGCAGCACTGTGACATGTTCATGATGGCCATAACGCCCACGCTGGAAGGTTGTGGGTTTACCGGAATGAGGGCAAGGAACACCTGGCCCGCCCAGGGCGGAAAACCGCTTAAAGGCATTCTTAAGCCACAAACAATAGCATGAGCGATCTGTGCCTTAAGGACATGCTCCTGCTGCAGNTAACTAGCCCAACCCATCCCTTTANTTCGGCCCATCCCTTCGTTTCCCATAAGGGATACTTTTAGTTAATCTAATATCTATAGAAACAATGCTAATGACTGGCTTGCTGTTAATAAATACGTGGGTAAATCTCTGTTCGGGGCTCTCAGCTCTGAAGGCTGTGAGACCCCTGATTTCCCACTTCACACCTCTATATTTCTGTGTGTGTGTCTTTAATTCCTCTAGCGCCGCTGGGTTAGGGTCTCCCCGACCGAGCTGGTCTCGGCA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER9a2 | EOMES | 428 | 436 | - | 15.76 | AGGTGTGAA |
| MER9a2 | Tbx6 | 428 | 436 | - | 15.67 | AGGTGTGAA |
| MER9a2 | TBX21 | 428 | 437 | + | 15.55 | TTCACACCTC |
| MER9a2 | TBX15 | 429 | 436 | - | 15.44 | AGGTGTGA |
| MER9a2 | TBX18 | 428 | 436 | - | 15.39 | AGGTGTGAA |
| MER9a2 | TBX1 | 429 | 436 | - | 15.16 | AGGTGTGA |
| MER9a2 | Gfi1B | 61 | 70 | + | 15.16 | AAATCTCTGC |
| MER9a2 | Plagl1 | 37 | 44 | - | 15.15 | TGGGGCCA |
| MER9a2 | byn | 428 | 436 | - | 14.79 | AGGTGTGAA |
| MER9a2 | KLF15 | 153 | 160 | + | 14.65 | GCCCGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
