MER51A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000809 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 634 |
| Kimura value | 10.95 |
| Tau index | 0.9329 |
| Description | MER51A Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | MER51A has 4 bp TSDs. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGAGGCAGGAGAATAGGGTCTGGAGGCAGGGAACCTAAGGCCGATTCACGCTGACTTCCTAGAACTAAATCGAAAGGAAAACCCCAACTTTCCACGCCCAAGTAACAAAAGGACCAGAGGCTACTCCCTTTGCAACCCCCCACCTTTTCTGCGTGGCAGATGGAAAATTGAAAGTACCTCTGATTGGTCCCCTCCCGCAACCAATCAGACTGGTCGCGGGCCAAGTCTTCATTTGCATAGGAGTGTAACTTTGTAACTTCACTTCAGCCTCTGATTGGTCGCTTTCCGCAACCAATCAGACGTTTGCATAGGAGTGTAACTTTGTAACTTCACTTCAGCCTCTGATTGGTCGCTTTCCGCAACCAATCAGACTGATCGCGGGCCACTACTTCATTTACATAGGGTGTACACCAAGTAACCAATGGGAAACCTCTAGAGGGTATTTAAACCCCAGAAAATTCTGTAACCGGGCCCTTGAGCCGCTTGCTCGGGCCCGCTCCCACCCTGTGGAGTGTACTTTCGTTTTCAATAAATCTCTGCTTTCGTTGCTTCATTCTTTCCTTGCTTTGTTTGTGCGTTTTGTCCAATTCTTTGTTCAAAACGCCAAGAACCTGGACACCCTCCACCGGTAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER51A | NFYA | 292 | 299 | + | 14.54 | CCAATCAG |
| MER51A | NFYA | 342 | 349 | - | 14.54 | CCAATCAG |
| MER51A | NFYA | 363 | 370 | + | 14.54 | CCAATCAG |
| MER51A | ZNF257 | 2 | 11 | + | 14.53 | GAGGCAGGAG |
| MER51A | Hand1 | 16 | 24 | - | 14.51 | TCCAGACCC |
| MER51A | Sox11 | 590 | 597 | - | 14.51 | GAACAAAG |
| MER51A | KLF14 | 92 | 100 | - | 14.51 | TGGGCGTGG |
| MER51A | POU5F1B | 231 | 239 | - | 14.46 | TATGCAAAT |
| MER51A | D19B | 434 | 445 | - | 14.35 | AAATACCCTCTA |
| MER51A | Stat4 | 55 | 64 | - | 14.34 | TTCTAGGAAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
