MER51A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000809 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 634 |
| Kimura value | 10.95 |
| Tau index | 0.9329 |
| Description | MER51A Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | MER51A has 4 bp TSDs. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGAGGCAGGAGAATAGGGTCTGGAGGCAGGGAACCTAAGGCCGATTCACGCTGACTTCCTAGAACTAAATCGAAAGGAAAACCCCAACTTTCCACGCCCAAGTAACAAAAGGACCAGAGGCTACTCCCTTTGCAACCCCCCACCTTTTCTGCGTGGCAGATGGAAAATTGAAAGTACCTCTGATTGGTCCCCTCCCGCAACCAATCAGACTGGTCGCGGGCCAAGTCTTCATTTGCATAGGAGTGTAACTTTGTAACTTCACTTCAGCCTCTGATTGGTCGCTTTCCGCAACCAATCAGACGTTTGCATAGGAGTGTAACTTTGTAACTTCACTTCAGCCTCTGATTGGTCGCTTTCCGCAACCAATCAGACTGATCGCGGGCCACTACTTCATTTACATAGGGTGTACACCAAGTAACCAATGGGAAACCTCTAGAGGGTATTTAAACCCCAGAAAATTCTGTAACCGGGCCCTTGAGCCGCTTGCTCGGGCCCGCTCCCACCCTGTGGAGTGTACTTTCGTTTTCAATAAATCTCTGCTTTCGTTGCTTCATTCTTTCCTTGCTTTGTTTGTGCGTTTTGTCCAATTCTTTGTTCAAAACGCCAAGAACCTGGACACCCTCCACCGGTAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER51A | dl | 76 | 85 | - | 17.26 | GGGGTTTTCC |
| MER51A | nub | 229 | 239 | - | 17.19 | TATGCAAATGA |
| MER51A | nfya-1 | 199 | 208 | + | 17.16 | AACCAATCAG |
| MER51A | nfya-1 | 290 | 299 | + | 17.16 | AACCAATCAG |
| MER51A | nfya-1 | 361 | 370 | + | 17.16 | AACCAATCAG |
| MER51A | ZNF148 | 189 | 198 | + | 17.06 | CCCCTCCCGC |
| MER51A | nfya-1 | 180 | 189 | - | 16.78 | GACCAATCAG |
| MER51A | nfya-1 | 271 | 280 | - | 16.78 | GACCAATCAG |
| MER51A | nfya-1 | 342 | 351 | - | 16.78 | GACCAATCAG |
| MER51A | ZBTB6 | 473 | 481 | + | 16.28 | CCTTGAGCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
