MER51A

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000809
TE superfamily	ERV1
TE class	LTR
Species	Haplorrhini
Length	634
Kimura value	10.95
Tau index	0.9329
Description	MER51A Long Terminal Repeat for ERV1 endogenous retrovirus
Comment	MER51A has 4 bp TSDs. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons.
Sequence	TGAGGCAGGAGAATAGGGTCTGGAGGCAGGGAACCTAAGGCCGATTCACGCTGACTTCCTAGAACTAAATCGAAAGGAAAACCCCAACTTTCCACGCCCAAGTAACAAAAGGACCAGAGGCTACTCCCTTTGCAACCCCCCACCTTTTCTGCGTGGCAGATGGAAAATTGAAAGTACCTCTGATTGGTCCCCTCCCGCAACCAATCAGACTGGTCGCGGGCCAAGTCTTCATTTGCATAGGAGTGTAACTTTGTAACTTCACTTCAGCCTCTGATTGGTCGCTTTCCGCAACCAATCAGACGTTTGCATAGGAGTGTAACTTTGTAACTTCACTTCAGCCTCTGATTGGTCGCTTTCCGCAACCAATCAGACTGATCGCGGGCCACTACTTCATTTACATAGGGTGTACACCAAGTAACCAATGGGAAACCTCTAGAGGGTATTTAAACCCCAGAAAATTCTGTAACCGGGCCCTTGAGCCGCTTGCTCGGGCCCGCTCCCACCCTGTGGAGTGTACTTTCGTTTTCAATAAATCTCTGCTTTCGTTGCTTCATTCTTTCCTTGCTTTGTTTGTGCGTTTTGTCCAATTCTTTGTTCAAAACGCCAAGAACCTGGACACCCTCCACCGGTAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MER51A	Gfi1B	531	540	+	15.16	AAATCTCTGC
MER51A	POU2F1	231	239	-	14.94	TATGCAAAT
MER51A	STAT1	56	64	-	14.93	TTCTAGGAA
MER51A	HAP5	266	279	+	14.82	AGCCTCTGATTGGT
MER51A	HAP5	337	350	+	14.82	AGCCTCTGATTGGT
MER51A	ZNF454	465	481	-	14.71	GGCTCAAGGGCCCGGTT
MER51A	STAT1::STAT2	163	175	-	14.64	ACTTTCAATTTTC
MER51A	NFYA	180	187	-	14.54	CCAATCAG
MER51A	NFYA	201	208	+	14.54	CCAATCAG
MER51A	NFYA	271	278	-	14.54	CCAATCAG

1 2 3 4 5 6 ... 30

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).