MER4B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000797 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 610 |
| Kimura value | 12.22 |
| Tau index | 0.9326 |
| Description | MER4B Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTAAACCAAAAATAAAATTCTAAGCCCCCCAACCATCTGAATGGACCCCTCCTCTCGGCCAAGGGCATTCCAAAGTTAACCTGAAAAACTGGTTCAGGCCATGATGGGAAGNGGGGGTCGGACATGCCTCATTATACCCTCCTCCCTTTTGGAATTCAGGNANAGCCGACCAGCATTAACATCAACACAGACCTTAAGTCTGATAAGAAACATTTACAATCTATTCTCTCTGAAGCCTGCTACCTGGAGGCTTCATCTGCATGATAAAACCTTGGTCTCCACAACCCCTTATCGTAACCCAGACATTCCTTTCTATTGATAATAACTCTTTCAACCAATTGCCAATCAGAAAATCTTTAAATCTACCTATGACCTGGAAGCCCCCGCTTCGAGTTGTCCCGCCTTTCCGGACCGAACCAATGTACATCTTACATGTATTGATTGATGTCTCATGTCTCCCTAAAATGTATAAAACCAAGCTGTACCCCGACCACCTTGGGCACATGTTCTCAGGACCTCCTGAGGCTGTGTCACGGGCGCGTCCTTAACCTTGGCAAAATAAACTTTCTAAATTGATTGAGACCTGTCTCAGATACTTTTGGGTTCACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER4B | EWSR1-FLI1 | 134 | 151 | - | -15.92 | AAAAGGGAGGAGGGTATA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
