MER4A1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000795 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 472 |
| Kimura value | 9.11 |
| Tau index | 0.9306 |
| Description | MER4A1 Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTGAAAGGAAAATAAATCTTGGGGCCCCAAAATCACTAAGCTAAAGGGAAAAGTCAAGCTGGGAACTGCTTAGGGCAAACCTGCCTCCCATTCTATTCAAAGTCACCCCTCTGCTCACTGAGATAAATGCATATCTGATTGCCTCCTTTGGAGAGGCTAATCAGAAACTCAAAAGAATGCAACCATTTGTCTCTCACCTACCTGTGACCTGGAAGCCCCCTCCCCGCTTCGAGTCNTCCCGCCTTTGCTTCGAGTTGTCCCGCCTTTCCGGACCGAACCAATGTNCATCTTACATATGTTGATTGATGTCTCATGTCTCCCTAAAATGTATAAAACCAAGCTGTGCCCCGACCACCTTGGGCACATGTCGTCAGGACCTCCTGAGGCTGTGTCACGGGCGCGCGTCCTCAACCTTGGCAAAATAAACTTTCTAAATTAACTGAGACCTGTCTCAGATTTTCGGGGTTCACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER4A1 | PLAGL2 | 22 | 29 | + | 13.69 | GGGGCCCC |
| MER4A1 | PLAGL2 | 22 | 29 | - | 13.69 | GGGGCCCC |
| MER4A1 | MYB99 | 196 | 203 | + | 13.66 | CACCTACC |
| MER4A1 | MYB39 | 194 | 205 | + | 13.57 | CTCACCTACCTG |
| MER4A1 | ZNF770 | 383 | 390 | - | 13.45 | CAGCCTCA |
| MER4A1 | MYB111 | 196 | 203 | - | 13.43 | GGTAGGTG |
| MER4A1 | KLF12 | 218 | 226 | - | 13.40 | GGGGAGGGG |
| MER4A1 | ZBED4 | 219 | 228 | + | 13.40 | CCCTCCCCGC |
| MER4A1 | NFIC | 414 | 420 | + | 13.37 | CTTGGCA |
| MER4A1 | KLF10 | 218 | 226 | - | 13.37 | GGGGAGGGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
