MER4A1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000795 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 472 |
| Kimura value | 9.11 |
| Tau index | 0.9306 |
| Description | MER4A1 Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTGAAAGGAAAATAAATCTTGGGGCCCCAAAATCACTAAGCTAAAGGGAAAAGTCAAGCTGGGAACTGCTTAGGGCAAACCTGCCTCCCATTCTATTCAAAGTCACCCCTCTGCTCACTGAGATAAATGCATATCTGATTGCCTCCTTTGGAGAGGCTAATCAGAAACTCAAAAGAATGCAACCATTTGTCTCTCACCTACCTGTGACCTGGAAGCCCCCTCCCCGCTTCGAGTCNTCCCGCCTTTGCTTCGAGTTGTCCCGCCTTTCCGGACCGAACCAATGTNCATCTTACATATGTTGATTGATGTCTCATGTCTCCCTAAAATGTATAAAACCAAGCTGTGCCCCGACCACCTTGGGCACATGTCGTCAGGACCTCCTGAGGCTGTGTCACGGGCGCGCGTCCTCAACCTTGGCAAAATAAACTTTCTAAATTAACTGAGACCTGTCTCAGATTTTCGGGGTTCACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER4A1 | Nr2F6 | 367 | 381 | - | -3.31 | GAGGTCCTGACGACA |
| MER4A1 | EWSR1-FLI1 | 77 | 94 | - | -9.39 | GAATGGGAGGCAGGTTTG |
| MER4A1 | AT4G12670 | 14 | 42 | + | -15.82 | TAAATCTTGGGGCCCCAAAATCACTAAGC |
| MER4A1 | ZSCAN16 | 364 | 381 | + | -23.70 | ACATGTCGTCAGGACCTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
