MER4A1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000795 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 472 |
| Kimura value | 9.11 |
| Tau index | 0.9306 |
| Description | MER4A1 Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGTGAAAGGAAAATAAATCTTGGGGCCCCAAAATCACTAAGCTAAAGGGAAAAGTCAAGCTGGGAACTGCTTAGGGCAAACCTGCCTCCCATTCTATTCAAAGTCACCCCTCTGCTCACTGAGATAAATGCATATCTGATTGCCTCCTTTGGAGAGGCTAATCAGAAACTCAAAAGAATGCAACCATTTGTCTCTCACCTACCTGTGACCTGGAAGCCCCCTCCCCGCTTCGAGTCNTCCCGCCTTTGCTTCGAGTTGTCCCGCCTTTCCGGACCGAACCAATGTNCATCTTACATATGTTGATTGATGTCTCATGTCTCCCTAAAATGTATAAAACCAAGCTGTGCCCCGACCACCTTGGGCACATGTCGTCAGGACCTCCTGAGGCTGTGTCACGGGCGCGCGTCCTCAACCTTGGCAAAATAAACTTTCTAAATTAACTGAGACCTGTCTCAGATTTTCGGGGTTCACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER4A1 | SP4 | 218 | 226 | - | 15.85 | GGGGAGGGG |
| MER4A1 | TBX19 | 192 | 208 | - | 15.55 | TCACAGGTAGGTGAGAG |
| MER4A1 | MYB51 | 194 | 204 | + | 15.46 | CTCACCTACCT |
| MER4A1 | MEIS1 | 301 | 309 | - | 15.29 | CATCAATCA |
| MER4A1 | MYB10 | 195 | 204 | + | 15.23 | TCACCTACCT |
| MER4A1 | MYB41 | 195 | 204 | + | 15.16 | TCACCTACCT |
| MER4A1 | RARA::RXRG | 195 | 211 | - | 14.95 | AGGTCACAGGTAGGTGA |
| MER4A1 | TBXT | 193 | 208 | + | 14.90 | TCTCACCTACCTGTGA |
| MER4A1 | MYB40 | 194 | 203 | + | 14.64 | CTCACCTACC |
| MER4A1 | Nr2e1 | 50 | 58 | + | 14.59 | AAAAGTCAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
