MER115
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000780 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 693 |
| Kimura value | 26.84 |
| Tau index | 0.7804 |
| Description | hAT-Charlie DNA transposon, MER115 subfamily (non-autonomous) |
| Comment | MER115 has imperfect 14 bp TIRs, and 8 bp TSDs. Its terminal regions (roughly pos. 1-67 and 535-693) derive from Zaphod, on which it probably depended on for transposition. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCTCTGGCCCTCCTCCGGCCGCGCCCCTCCCCACGGGGCGAGGAGTCCGCGGGGCCAAGGGGACGTGCCCACCCGGAGCCCGCGCCCCCCCTTCTAGACCACGCTCCGGGTACCCGGGACCCCGGAATTCCCTGCCCAAACGGCCCCGAGCCCGCTTCCAGGGCCTGCGCGGGCCTCTTCCCCGGGTCCGTCCTCCCGAGGGCGGACCGCGCCGCCGGTGTGCGCACCCCTAGGCCCGAGGGGTGGCCAAGGGGCGGCTGTTTGCGGGGGGTGTGGACGGAGCTTGGACGTGCGGGCTGGGGTGTCCACACGCGTGCGCGCGAGGCCCCTCGCGGTGCGGGACGGAGCCGGGGGTGGGAAGAGAAGGGGGGCGGGCCGCGGGCCGGGGGCCGGCTCTCCCCGCGCCGCCACGTTCCGGCGCGGAACTCCGAGGAGTCCGAGAATTCTAAATTCGAACCTGGCCTTCCAGGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER115 | SP2 | 433 | 441 | + | 15.67 | GGGGCGGGC |
| MER115 | SP2 | 682 | 690 | + | 15.67 | GGGGCGGGC |
| MER115 | btd | 432 | 440 | + | 15.62 | GGGGGCGGG |
| MER115 | ZNF148 | 89 | 98 | + | 15.61 | CCCCTCCCCA |
| MER115 | ZNF320 | 114 | 133 | + | 15.60 | GCGGGGCCAAGGGGACGTGC |
| MER115 | SUT2 | 488 | 497 | + | 15.57 | GAACTCCGAG |
| MER115 | ERF109 | 274 | 281 | + | 15.56 | GCGCCGCC |
| MER115 | ERF109 | 467 | 474 | + | 15.56 | GCGCCGCC |
| MER115 | Os05g0497200 | 275 | 282 | + | 15.51 | CGCCGCCG |
| MER115 | Spps | 432 | 442 | - | 15.43 | GGCCCGCCCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
