MER115
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000780 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 693 |
| Kimura value | 26.84 |
| Tau index | 0.7804 |
| Description | hAT-Charlie DNA transposon, MER115 subfamily (non-autonomous) |
| Comment | MER115 has imperfect 14 bp TIRs, and 8 bp TSDs. Its terminal regions (roughly pos. 1-67 and 535-693) derive from Zaphod, on which it probably depended on for transposition. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCTCTGGCCCTCCTCCGGCCGCGCCCCTCCCCACGGGGCGAGGAGTCCGCGGGGCCAAGGGGACGTGCCCACCCGGAGCCCGCGCCCCCCCTTCTAGACCACGCTCCGGGTACCCGGGACCCCGGAATTCCCTGCCCAAACGGCCCCGAGCCCGCTTCCAGGGCCTGCGCGGGCCTCTTCCCCGGGTCCGTCCTCCCGAGGGCGGACCGCGCCGCCGGTGTGCGCACCCCTAGGCCCGAGGGGTGGCCAAGGGGCGGCTGTTTGCGGGGGGTGTGGACGGAGCTTGGACGTGCGGGCTGGGGTGTCCACACGCGTGCGCGCGAGGCCCCTCGCGGTGCGGGACGGAGCCGGGGGTGGGAAGAGAAGGGGGGCGGGCCGCGGGCCGGGGGCCGGCTCTCCCCGCGCCGCCACGTTCCGGCGCGGAACTCCGAGGAGTCCGAGAATTCTAAATTCGAACCTGGCCTTCCAGGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER115 | Klf15 | 78 | 99 | + | 19.72 | CTCCGGCCGCGCCCCTCCCCAC |
| MER115 | BAD1 | 662 | 673 | + | 18.56 | CCCGGGCCCCGC |
| MER115 | KLF3 | 82 | 91 | + | 17.60 | GGCCGCGCCC |
| MER115 | GLIS2 | 325 | 338 | - | 17.56 | CACCCCCCGCAAAC |
| MER115 | Klf15 | 326 | 347 | - | 17.09 | CTCCGTCCACACCCCCCGCAAA |
| MER115 | ZNF574 | 21 | 34 | + | 17.03 | GGCAAGAGGGGCCC |
| MER115 | BAD1 | 145 | 156 | + | 16.98 | CCGCGCCCCCCC |
| MER115 | Klf6-7-like | 79 | 98 | + | 16.87 | TCCGGCCGCGCCCCTCCCCA |
| MER115 | Mad | 78 | 92 | - | 16.84 | GGGGCGCGGCCGGAG |
| MER115 | BAD1 | 448 | 459 | + | 16.79 | CCGGGGGCCGGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
