MER115
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000780 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 693 |
| Kimura value | 26.84 |
| Tau index | 0.7804 |
| Description | hAT-Charlie DNA transposon, MER115 subfamily (non-autonomous) |
| Comment | MER115 has imperfect 14 bp TIRs, and 8 bp TSDs. Its terminal regions (roughly pos. 1-67 and 535-693) derive from Zaphod, on which it probably depended on for transposition. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCTCTGGCCCTCCTCCGGCCGCGCCCCTCCCCACGGGGCGAGGAGTCCGCGGGGCCAAGGGGACGTGCCCACCCGGAGCCCGCGCCCCCCCTTCTAGACCACGCTCCGGGTACCCGGGACCCCGGAATTCCCTGCCCAAACGGCCCCGAGCCCGCTTCCAGGGCCTGCGCGGGCCTCTTCCCCGGGTCCGTCCTCCCGAGGGCGGACCGCGCCGCCGGTGTGCGCACCCCTAGGCCCGAGGGGTGGCCAAGGGGCGGCTGTTTGCGGGGGGTGTGGACGGAGCTTGGACGTGCGGGCTGGGGTGTCCACACGCGTGCGCGCGAGGCCCCTCGCGGTGCGGGACGGAGCCGGGGGTGGGAAGAGAAGGGGGGCGGGCCGCGGGCCGGGGGCCGGCTCTCCCCGCGCCGCCACGTTCCGGCGCGGAACTCCGAGGAGTCCGAGAATTCTAAATTCGAACCTGGCCTTCCAGGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER115 | KLF5 | 88 | 97 | + | 16.10 | GCCCCTCCCC |
| MER115 | MAZ | 89 | 96 | + | 16.08 | CCCCTCCC |
| MER115 | SP1 | 89 | 97 | - | 16.06 | GGGGAGGGG |
| MER115 | ERF091 | 464 | 476 | - | 15.97 | GTGGCGGCGCGGG |
| MER115 | ERF2 | 464 | 476 | + | 15.95 | CCCGCGCCGCCAC |
| MER115 | Zm00001d005892 | 275 | 282 | + | 15.92 | CGCCGCCG |
| MER115 | KLF11 | 332 | 341 | - | 15.87 | CCACACCCCC |
| MER115 | SP4 | 89 | 97 | - | 15.85 | GGGGAGGGG |
| MER115 | ZNF454 | 440 | 456 | - | 15.85 | GGCCCCCGGCCCGCGGC |
| MER115 | Klf15 | 426 | 447 | - | 15.85 | CCCGCGGCCCGCCCCCCTTCTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
