MER115
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000780 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 693 |
| Kimura value | 26.84 |
| Tau index | 0.7804 |
| Description | hAT-Charlie DNA transposon, MER115 subfamily (non-autonomous) |
| Comment | MER115 has imperfect 14 bp TIRs, and 8 bp TSDs. Its terminal regions (roughly pos. 1-67 and 535-693) derive from Zaphod, on which it probably depended on for transposition. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
CAGTACCGCCCTTAGACCCGGGCAAGAGGGGCCCCTGCCCTGGGCCCCGCGCTTTAGAGGGCCCCGCTCTGGCCCTCCTCCGGCCGCGCCCCTCCCCACGGGGCGAGGAGTCCGCGGGGCCAAGGGGACGTGCCCACCCGGAGCCCGCGCCCCCCCTTCTAGACCACGCTCCGGGTACCCGGGACCCCGGAATTCCCTGCCCAAACGGCCCCGAGCCCGCTTCCAGGGCCTGCGCGGGCCTCTTCCCCGGGTCCGTCCTCCCGAGGGCGGACCGCGCCGCCGGTGTGCGCACCCCTAGGCCCGAGGGGTGGCCAAGGGGCGGCTGTTTGCGGGGGGTGTGGACGGAGCTTGGACGTGCGGGCTGGGGTGTCCACACGCGTGCGCGCGAGGCCCCTCGCGGTGCGGGACGGAGCCGGGGGTGGGAAGAGAAGGGGGGCGGGCCGCGGGCCGGGGGCCGGCTCTCCCCGCGCCGCCACGTTCCGGCGCGGAACTCCGAGGAGTCCGAGAATTCTAAATTCGAACCTGGCCTTCCAGGTCGTTATGAAGGTATATTTGTCAAGGTAGGAGGATAGAACATATTTTATTTAACAGTTTGTTAGCTTGATTTATAACTTTTAAATATTTAGACATATGGTATGTGGGCCTCCATTTGTACTCTTGCCCCGGGCCCCGCAAATGTTAGGGGCGGGCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER115 | ERF095 | 464 | 476 | - | 16.38 | GTGGCGGCGCGGG |
| MER115 | Klf15 | 431 | 452 | - | 16.36 | CCCGGCCCGCGGCCCGCCCCCC |
| MER115 | ERF076 | 467 | 476 | + | 16.36 | GCGCCGCCAC |
| MER115 | sug | 327 | 338 | - | 16.34 | CACCCCCCGCAA |
| MER115 | CRF4 | 467 | 476 | + | 16.34 | GCGCCGCCAC |
| MER115 | TCX2 | 508 | 522 | + | 16.19 | ATTCTAAATTCGAAC |
| MER115 | Klf15 | 324 | 345 | - | 16.18 | CCGTCCACACCCCCCGCAAACA |
| MER115 | ERF105 | 467 | 476 | - | 16.17 | GTGGCGGCGC |
| MER115 | ERF104 | 461 | 476 | + | 16.17 | CTCCCCGCGCCGCCAC |
| MER115 | TCX6 | 613 | 627 | + | 16.16 | TTTTAAATATTTAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
