LTR7C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000588 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 470 |
| Kimura value | 10.47 |
| Tau index | 0.9171 |
| Description | Long terminal repeat of an HERVH endogenous retrovirus |
| Comment | LTR of an HERVH element active 25-40 MYA. At least 3 distinct subfamilies in this set, but each with very few copies. |
| Sequence |
TGTCAGGCCTCTGAGCCGAAGCTCAGCCATTGTAACCCCTGTGACCTGCACATATACGTCCAGATGGCCTGCAGGAGCCAAGAAGTCTGGAGCAGCCGAAAAACCACAAAAGAAGTGAAACAGCCAGTTCCTGCCTTAACTGATTAACCAACCTTACGACATTCCACCATTGTGACTTGTCCCTGCCCTACCCCAACTGATCAATCGACCTTGTGACATTCTTCTTCTGGACAATGAGTCTTATGATCTCCCCACCATGCACCTTGTGACCCCCTCCTCTGCTGACAATAGATAACCACCTTTNACTGTAACTTTCCACTGCCTACCCAAGTCCTATAAAGCNGCCCCTCCCCTATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCCAAGTGAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGCTTGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR7C | BPC5 | 348 | 377 | - | -44.32 | AAAGAGAGTCAGCGAAGGGAGATAGGGGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
