LTR64
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000563 |
|---|---|
| TE superfamily | ERV1 |
| TE order | LTR |
| Species | Primates |
| Length | 528 |
| Kimura value | 16.54 |
| Tau index | 1.0000 |
| Description | LTR64 (Long Terminal Repeat) for ERV1 endogenous retrovirus |
| Comment | 4 bp TSDs. |
| Sequence |
TGTGAGACAAAGTAGCAAACGTAAGAAGCCATGTTTGCTCATTTCTGCTTGCCAGCATAATTTCACAAAGCCCCTGACTCTGTGACGACGTGCAGCTCTCCGGAAAGATGCTTTGAAGACAAAACAGGATAGAGCACACGGCCCCCCACGTCTCTTGCCTGAGTCACTATATTCCTTAAAAGATAAATGACCCTAGTCCTTGCCTTTTCCTACACATAAGATAACGTCTGACGGGGTTAGTGATTATGCCTCTGTAATCTATAACCAGATGTACTCTTACACCCAAACCTTGATGTGATTCTGCTTTAATGTAACTTCTGAGCAAGTTTGATGTGATTTTGCACGTACTGAACCTCCACCACCTGTATATAAGCNGTGGGCTGAAACACTGCGCCGGAGCAGTCTGACAGAACCTCTCTGAAGGGCTGCTCCCGGGCTGTAGGCCTCGGTCTATAGTCCTCAGTAAGACTTCTGAATAAAACTAACTTTAATTCTTTAAAAGCTTGATTTTTTTTTCTTTAGTCGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR64 | FLI1::FOXI1 | 121 | 131 | + | 13.71 | AAAACAGGATA |
| LTR64 | EmBP-1 | 146 | 153 | - | 13.69 | AGACGTGG |
| LTR64 | lmd | 140 | 151 | + | 13.61 | GGCCCCCCACGT |
| LTR64 | ZNF384 | 508 | 515 | - | 13.57 | AAAAAAAA |
| LTR64 | ZNF384 | 509 | 516 | - | 13.57 | AAAAAAAA |
| LTR64 | DOF5.1 | 504 | 522 | - | 13.55 | CTAAAGAAAAAAAAATCAA |
| LTR64 | fkh | 32 | 42 | + | 13.51 | TGTTTGCTCAT |
| LTR64 | esg | 360 | 366 | + | 13.41 | CACCTGT |
| LTR64 | EPAS1 | 340 | 348 | + | 13.41 | TGCACGTAC |
| LTR64 | REI1 | 71 | 77 | + | 13.40 | CCCCTGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
