LTR25-int
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000468 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7188 |
| Kimura value | 14.80 |
| Tau index | 0.0000 |
| Description | Internal region of ERV1 endogenous retrovirus, LTR25-int subfamily |
| Comment | MER4 group. |
| Sequence |
TATTTTGGTGCATTGGCCGGGAAAGAAAGGAATTCATCAGAAGGGTGAGTAAGAGCGGACCTTTAACTCTTTACTTTCATTTCCGAGGCTTGTCCTCAGTTTTTTTTTNNNNNNNCTCAAGAANCAAACAAAACACTGGGCCCCTGTCAGCCAGTTAAAAGACNAATAGCGTGGCTGCCAGCCTTANAAGACTCAGGGGACAGGCTTGCTGGAGAGGACTTTGTCAATCCCCCATCGCCCTCGGGTGTTGGGAATGTTGGCTCTGTTCCAATCCAGTTTCCTTTCACGGAGGGCCTAGCCGTCGCGTGGGGTTGGAAGGAGGTCCTAGGGCAACTGAAGGTTTCTGGCCGAGGCTACACCTCGGTGTTACCTGAAGGCCCCTGGACTAACTCCAGTCCCCGACAGCCCATNCAGGGTGTCGGCACNAGGACTTCCAGTCTTTTCTATCGCATTTTCCTTCTTTCTTTTCGTGGCTATCATGTCTCCTATCCCTTCTTTGTATGCAATGTTGNGGGTGTTTTTGCAACCTGGGGATATAATCTTGCTGGGTAAAGTCAGTCAGTGCCTTAGTAATCAGGAATGTAACTCAAAGAATTGCTGTTTTTGTGATTTCCTNGAAACAGGGGGANTTCAAGATTTCAGTCTAAATTTTCACCTAGTAAGGGCCTTTTTGTCCCCCAATAATAGACATTCATGGCACTGTATGGGAGGATATTTCACCCCGAGTGAATACCCTCCTCTCCATTTGGGTTGTTTTTTTTCCTCCATGTAAAAGCTCAGCACTGCCCAATGAATCTAAACAGTTCCTTTATGAGACAAGTTAATTTTCTTCTGCTGGGGGGCATACTATGGGGACAGCCTATCAAACCCCAAACCTCTCTTTCTAACTTTTGCCTGGAAAGAATTTAGTCAGAGTTTTTACCTAACATTTCNAACCCTACAGCGCCACCTAGTGGAATGGGATTTTTCTCCGTGGGGAGCCTTGTCGGCCCTTTGCCCNAAACCTCTAGTTCCCCAATTCTTTTCCCTCTTACGTCCCTCTATCAGTGATCAGGCCCCATGCCCTATTTGTAGACAGAAAAACTCCACTTTCAACAGCCGGGAGGAAGCCACCCTGANAAGACAGATCTTGCCTCAGTACTGTCCCCATCAAAGGAAGGACAGCCATTCAATCCTTACGCTCTTTTCGAGGCACCTGTTCTGCATCCAACTACATTGGNATTTAAACAAAAAAGGGATTTTATGTTTGGAAGTCAATCGGTCCCATTCTCTGGGATTTCGATNTTTCNCTGGGGCCATAGCAAGGGAAGCCAGAGATAGTGTTAGGACACTCCCTCCATTAAAGNGTTTGCCCAAATCCAACTACTACATAATCTCTCCCGGGCCCCTGGGGTACCTTGGGAGCCTTTTGGGCCGAGTGGGTCTAGGAAACCAGCAGGGCGGAAAGCTAGGGCCTCGCGCAGGTAAGCACATGACTANTCCTGCCGACTAGCTCCTCCGGATCCATGGGTGAAGGTCACGCTTGCATCCATGGGTGGCACCTATGATGGTCGCCGGGACCCAGAGGAGANGGAAGGAAAGAGGAGAAGGGGGACGCCCTTTCTCTCTTTCCCTCCACCCTGGGTCACNCCGAAAGGAGGAAGGAGACTAAGGGACGCCTTTGTCTCCCCTCTCTTTCTAGATGGGTAACAAACCATCTNCAGCCTGCACTCCCCTCGAGTGCATTCTGAANCACTGGAACTCCTTTGACCCTGAGACTCTGAAGAAAAAACGGCTTATATTCTATTGCACAAGGGCATGGCCATCTTACCAGGGGAGACAGAAGGCCTGGCCTTCTGAGGGAAGCGTTAATTTCAATACTATCCAACAACTAGATCTTTTCTGGCGGGAGGGAAATGGCGGTTCCCTATGTACAAGCTTTCTTTGCCCTGCGAGACAACCCAGATCTTTGTAAGCATTGTAAAATTGACCCTGCCCTCTTGGCAGCCATATCAGGCAAGCCTACAAAGGATAATTCCCCAAAGTCAGAGAGACAAACCCTTGGGGAACCCTCAAATGCAACTTCTGGGTGCCCTACCTGCCCCCCTTATCCGGGGCCCCCAATAGCCATATCATCAGCTCCTCCGGTTGTGCCACTCAAGAAACCCCNACATTCGCTGTTGCCCCTGCAGGAAATGCCCGATGGACATGGTGCTACTAGGGTTCAAGTTCCCTTCTCATTGCAGGACCTTAGACAAATAAAGGGGGACCTAGGCAAGTTCTCTGATGACCCTGATAGATATATAGAGGCTTTCCAAAATTTAACCCAAGTGTTTAATCTTACATGGAGAGATGCTATGCTACTCTTAAGCCAAACCCTAACTGCTGCCGAGAAACAGGCAGCCCTACAGGCAGCAGAGANATTCGGAGACAAACAGTATCTCCTATAGCCAGTCAAAAAGAAACCCAGTCAAAGNGAAAGAGGTAAAAAAGAGACAGGATCCCCATTCCCAATAGGAAGAGAAACAGTGCCCCTTGAAAACCCTAATTGGAGCCCTAGTGATCCCATAGATGAGTGGAAAAGAAAACACTTTCTGATGTGCATATTAGAAGGCTTGCAAAGAACCAGAACCAAACCTCTTAATTACTCTAAACTGTCCNTGTTAAATCAGAAACCAGATGAAAATCCCTCGGCCTTTTTGGAAAGGCTGAGAGAAGCTTTAGTGAAACACACCTCCCTGTCTCCCGATTCAATAAAGAACAGGTTTATTACTCAGGCAGCCCCTGATATCGGAAGGAAGTTGCTGAAACAGGCCCTGTCCAAANATCTTTCTAGTTTTTCTCACCCTCAAGTTGAAACTTTGCAGTATGTAAATGACACTCTCCTCTGTGCCCCAACCGAGGAGGTCTCAGGAAGGCACTGAGGCTCTCCTCAATTTCTTAGCTGAAAGGGGATATAGGGTCTCAAAATCTAAAGCTCAGCTCTGTCAGACTTCAGTAAAGTACCTAGGTCTAGTCTTATCAGAAGGGACCAGAGCACCAGGTGAGGAAAGGATTAAGCCCATTTCCTCCTTTCCCTTNCCCAAAACTCTTAACAGTTAAGGGGATTCTTAGGCATTACTGGATTTTGCAGACTGTGGGTACCTGGGTACGGTGAAATAGCTCACCCTTTATACCACCTCATAAAAGAAACTCAAGCAGCTAAAACTCACTCCCTAACTTGGGAACCTAAAACTCAAAAGCCTTTAACCAGCTAAAGCAAGCCTTACTTAAAGCACCAGCCCTCAGTCTTCCCATAGGGAAGGCATTCAGTCTCTATGTATCAGAAAGGAAGGGAATGGCCCTGGGAGTTTTAACTAAGGCTCGAGGTCCAGCTCAACAGCCAGTGGGTTACCTAAGCAAGGAACTTGACTTGGTGGCTAAAGGATGGCCAGCCTGCCTCCGAGCAGTTGCAGCGGTGGCTTTGCTGGTGCCAGAGGCCACCGGGTTAACCATGGGGAATAACTTAACTGTTTGCACCCCACACAGTATAGCAGGACTGCTGTCCTCTAAGGGAAGTCTCTGGCTAACAATCGCCTCCTCAAATATCAAGCTTTGCTGCTAGAGGGATCTGCAGTCCAGTTGAAAACCTGCCCTTGCCTGAACCCAGCCACTTTCTCCCAGAGGAAACTGGAGAACCTGAACATGATTGTGAACAGGTAGTGGTGCAAACCGGTAAAAGAAATGATAAGAATCACTGTTTATATTCTCTGTAAAGTTTTAATTAATGAAAAAGGATTTTCTTAAAGAGCGCTCAGCTTAATTAAAAGTGGATATCCAAGCTATAGGTATATTTAAAAGGCCTTTATGTTTTTCTCTTCNTGGATCTTGTTTTNCTGGAAAAGGNTTTTTTCTCAGTCGACTGAATTACTTTTCTCCATTTTGTCTTGCCACTCTTAATGCACGCATGAGAGGCCCTAAGATAACTTCTGATGGCCTGGGACTCCTTGGGAAAACAGAAAAGGCGCCACGGATCCCATTTTGGGAAAAACCTCTGTTTTCCTCATGGAACCCCAGGAATTAGAGGCGGATAGATCCCTCTCAAAATCTGTTTTTGTCTTCCAGCTATGCCTGTTTATTAGGCCCTAGAAACTGCATTCCTAGCCCTGTTCTTGAAGGGCTCCACCCNGAGGCCAATAATCCAATTAGGAGATTGGCAAATGAAAAATCTACAACTACTGGATCTTCTTCTGTCTGTCTGGTAGTTATATATGTGTTGTGTGTGATGTCTATTAAAAAAGCTCTAATTAATTGGCTTAAAAATAAGCGCTTAGATCAAATATTTTTAAGGGAAAAGTAAAAGCTGTAATGCCTTTTAGTTCACGTGACTTTAATCTTTGAGAAATAAAAACGTCTTAAAGATTATTGGTAAAATACAAATGTCTTCAAAATGTAAATATGTGGTCTAAATTATGCAGGTCAGATACTAGGTTTGCTAAATGTTTTAAGGTTATAAACTGCTTCTTTGGCTTTTGAAAACTGTCGACTTGCCTGCTTTACAATTGGTAAGGCCTGGGGACATATGGAATTAACCACGCCCCTAACTATGCTGGAAAGAGTCAAACCTTATCTGCGCCTAGNACATAATTAAAACAACTTACCAGGTTTTACATTAAAGTTAAAATTGCTAAGAGTTACCATTATAACATGTAATTGAGACTACTGAAAATAGATTTACATGCAAGGTGTGTAAGAACAGTAAAATGTTTTTAGTAAAAGATTATAAGAAGGCATGGAAATGTAAATTTTGCCTAGGGNTAAAGGATTGTTTTAAATTAGATAAAGTAAAAGGTTTAAACAAGTTGTGGAAGGNTTGTAAAAATTAATCTTGCAAAAGAAATTCTGTGTGTGAACATATTGACTAAATTCAAAAGGGTATTATATGGTTTTTCCGTAAATTGAGCATTGAAATAAAAGCACAACAAGGTTTTCTTAAGGCGCTAATCTGCTCTTTAGCAAAATTTGTAAAGGGTTATAAAAGGTTTATAAGAATCTCACCTCATGGTCAAACTGGTTAAGATTGGATAGAATTGTCTATAAGGTTTCATTAAAAATTGGGGTTGACATTAATAGTAAACTAATGCAAGGGTGAAATTTGGCTTTCTCTCTTGAACAGGATTTTCATGTAATAGTAAAGGNTAATGAAAGGTTTTTGCTTTTTNAAATTTTTGAGTCATCATTTTGGCAAAATAAATAACTTATGGTAATCTGGAATTCTATTTCATAATATCAAGTGTTTTAAACCTCTAACATATTTAACAGGCTTCCCAAAATCAAACTTCAGTTTCAAAATTGTCTTTCCTGACCCCTAGCTTTTGGATGCTACAGAGGCCCCTGGAGCATCCAAAAGAGAGGTAAACAGGATTATTTGACATGTTTAGNTACATGGGATTGCCAAAATGATGTTTAATTTCTTCAGGTTATATTTTAGTGAATAATATTAATATATGTTCCAAAATTGTATGGGATTTCTAAAATTCTAATGTCTGAGTATATGCTATCAATCATAATTAAGGTTATTATGTTAAGTTATTGTAAACCACAGAAATAACCAAATTTCTTTGTCAATCGTGTTTTTGACTGTAACTACCCTGGACATTTTGTCATTCACAGACAATTGTCTTGTTTTGATCCTCTTCAAAAGATGGTTTATAATCAGCTATAGGACTTTGACAGGTGCTCTCAAATGCAGGTTTCTGATAACAGAAAAACGTACAGGACTCATGAAGAGCTGAAATGTTCATGAATATCAAGCAGAACAAGAGTTAACGGAATGGACTGAACTAATAGAAAACTGAAGTAATCTTTTTAACTTTTGCTTAAAACATTGCTGATCCTTGTTTTGTTTTTCAGAGTCAAGGAAACTTTTGAGCTATTTACAGCCTTTAACAATTGAGTAAGGTATACTCCTGTGAACAAAATTTGGAGCATGTTTGTTTCTCTCTGCCTGGTTCCTCTAGAATTTGGAAACTANTTGTGAGTATTCTTAACTTACGGCAATATAGTTGTTTGCATCAGTGCAATAAAATCCATTTTCTTTTGCAACAGGACGCAATTGGAGAANACTGGTTGTTTTACCAAGGCTTTGACTGGAAGGGTGTGCTTCCCTTTAAGGAATCAAGCTTGACTTGCAGAGCCAATAAAAGCCCCTTGGGAAAACTGGCCTCATACCTTGTCTACACAGTCCCCGTACAGGGTTCCTAACCTGTGGTGAGTAAAGAATGTCACTTTCTAACAGGCCCAGGAGCCCATGTTCTTGGGACCTCAAGAAGAGAGGAATTTACCCAACTCATAGGTATTTGAGGGTACAAACCCATGGCTGGGCTCGGCTTTAAAAAGTCTTATCTGAGATTCCTTGTGGAACAGAGTTCCATCAAAGCCAATTTAAAAGGCCTATGTAAAAATAATTATTCTTGCTGCACTTTATGCAAATAATCAGGCCAAGTATAAGACTAAAGTTTATTTTGCAAACAACTCAGTCTATCATGATTTGTTTTTAACAAAAATGAGGACTGGAGAGAGAGAAATTATGTTTCAAAACTTATCATACATTTGTCATTAAATTCTAGTCTCATTAGTTGTTTTTAAGTTTTTGCCTACATTTTAGACTAACCCTGCTTATTCCTGTGAACCAACCAGCGATCTCCGGCTGCAGCTCAGAAAAACAAAAAGGGATGGGTAATGTAAAAATCTGGATCAATATTCTAGTTCTGGGCAATTATCCTGCAAATCCTGCCAGGTGATGGGAGTAAATAGGGTGCCCATAACCCGGAGGTTTCTTTTTTTGGGAAAATAAGACCAAGGGAGCTAACCAAAGCCAAGCCCCATGCACCCAAATCTTAGCAGGCATAACTATAGCCACCAGTTATCTGGGCGTGTCGGCAGCCTCGGGATTTTTGAGCTCGTCCTTACCCCCCTTGTTTCGTTTTGATACATGTCTTCTAATAACCCGGTTTGTCTCTTCTCGCCTTCAGGCCATCAAACTCCAAATGGTCATGCAACCGGAGCCNCGNATGANCGCGCCTTTCTNCCGGGGACCCTTAGATNGGCCTCNGGGGGAGNCCTGACTGCTGTTCCCNAAACAGCGCCCCCCGTCAGCAGGAAGCAGTTAGAAAGATCANCGCCCANTCTCCCTAACGGCAGTTAGGGTCTCCACTCCTGAGGGGGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR25-int | ETV5::FOXO1 | 5373 | 5382 | + | 16.13 | GTAAACAGGA |
| LTR25-int | KLF3 | 4549 | 4558 | + | 16.09 | AACCACGCCC |
| LTR25-int | MYOD1 | 5690 | 5698 | - | 16.05 | GCACCTGTC |
| LTR25-int | REF6 | 4011 | 4019 | - | 15.93 | AAAACAGAG |
| LTR25-int | TFEC | 4340 | 4347 | + | 15.88 | CACGTGAC |
| LTR25-int | ZNF331 | 6148 | 6157 | + | 15.87 | TGCAGAGCCA |
| LTR25-int | POU2F3 | 6443 | 6451 | + | 15.87 | TATGCAAAT |
| LTR25-int | nub | 2847 | 2857 | + | 15.82 | TATGTAAATGA |
| LTR25-int | KLF12 | 4551 | 4559 | - | 15.80 | GGGGCGTGG |
| LTR25-int | squamosa | 6794 | 6806 | - | 15.79 | CCAAAAAAAGAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
