LTR25-int
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000468 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7188 |
| Kimura value | 14.80 |
| Tau index | 0.0000 |
| Description | Internal region of ERV1 endogenous retrovirus, LTR25-int subfamily |
| Comment | MER4 group. |
| Sequence |
TATTTTGGTGCATTGGCCGGGAAAGAAAGGAATTCATCAGAAGGGTGAGTAAGAGCGGACCTTTAACTCTTTACTTTCATTTCCGAGGCTTGTCCTCAGTTTTTTTTTNNNNNNNCTCAAGAANCAAACAAAACACTGGGCCCCTGTCAGCCAGTTAAAAGACNAATAGCGTGGCTGCCAGCCTTANAAGACTCAGGGGACAGGCTTGCTGGAGAGGACTTTGTCAATCCCCCATCGCCCTCGGGTGTTGGGAATGTTGGCTCTGTTCCAATCCAGTTTCCTTTCACGGAGGGCCTAGCCGTCGCGTGGGGTTGGAAGGAGGTCCTAGGGCAACTGAAGGTTTCTGGCCGAGGCTACACCTCGGTGTTACCTGAAGGCCCCTGGACTAACTCCAGTCCCCGACAGCCCATNCAGGGTGTCGGCACNAGGACTTCCAGTCTTTTCTATCGCATTTTCCTTCTTTCTTTTCGTGGCTATCATGTCTCCTATCCCTTCTTTGTATGCAATGTTGNGGGTGTTTTTGCAACCTGGGGATATAATCTTGCTGGGTAAAGTCAGTCAGTGCCTTAGTAATCAGGAATGTAACTCAAAGAATTGCTGTTTTTGTGATTTCCTNGAAACAGGGGGANTTCAAGATTTCAGTCTAAATTTTCACCTAGTAAGGGCCTTTTTGTCCCCCAATAATAGACATTCATGGCACTGTATGGGAGGATATTTCACCCCGAGTGAATACCCTCCTCTCCATTTGGGTTGTTTTTTTTCCTCCATGTAAAAGCTCAGCACTGCCCAATGAATCTAAACAGTTCCTTTATGAGACAAGTTAATTTTCTTCTGCTGGGGGGCATACTATGGGGACAGCCTATCAAACCCCAAACCTCTCTTTCTAACTTTTGCCTGGAAAGAATTTAGTCAGAGTTTTTACCTAACATTTCNAACCCTACAGCGCCACCTAGTGGAATGGGATTTTTCTCCGTGGGGAGCCTTGTCGGCCCTTTGCCCNAAACCTCTAGTTCCCCAATTCTTTTCCCTCTTACGTCCCTCTATCAGTGATCAGGCCCCATGCCCTATTTGTAGACAGAAAAACTCCACTTTCAACAGCCGGGAGGAAGCCACCCTGANAAGACAGATCTTGCCTCAGTACTGTCCCCATCAAAGGAAGGACAGCCATTCAATCCTTACGCTCTTTTCGAGGCACCTGTTCTGCATCCAACTACATTGGNATTTAAACAAAAAAGGGATTTTATGTTTGGAAGTCAATCGGTCCCATTCTCTGGGATTTCGATNTTTCNCTGGGGCCATAGCAAGGGAAGCCAGAGATAGTGTTAGGACACTCCCTCCATTAAAGNGTTTGCCCAAATCCAACTACTACATAATCTCTCCCGGGCCCCTGGGGTACCTTGGGAGCCTTTTGGGCCGAGTGGGTCTAGGAAACCAGCAGGGCGGAAAGCTAGGGCCTCGCGCAGGTAAGCACATGACTANTCCTGCCGACTAGCTCCTCCGGATCCATGGGTGAAGGTCACGCTTGCATCCATGGGTGGCACCTATGATGGTCGCCGGGACCCAGAGGAGANGGAAGGAAAGAGGAGAAGGGGGACGCCCTTTCTCTCTTTCCCTCCACCCTGGGTCACNCCGAAAGGAGGAAGGAGACTAAGGGACGCCTTTGTCTCCCCTCTCTTTCTAGATGGGTAACAAACCATCTNCAGCCTGCACTCCCCTCGAGTGCATTCTGAANCACTGGAACTCCTTTGACCCTGAGACTCTGAAGAAAAAACGGCTTATATTCTATTGCACAAGGGCATGGCCATCTTACCAGGGGAGACAGAAGGCCTGGCCTTCTGAGGGAAGCGTTAATTTCAATACTATCCAACAACTAGATCTTTTCTGGCGGGAGGGAAATGGCGGTTCCCTATGTACAAGCTTTCTTTGCCCTGCGAGACAACCCAGATCTTTGTAAGCATTGTAAAATTGACCCTGCCCTCTTGGCAGCCATATCAGGCAAGCCTACAAAGGATAATTCCCCAAAGTCAGAGAGACAAACCCTTGGGGAACCCTCAAATGCAACTTCTGGGTGCCCTACCTGCCCCCCTTATCCGGGGCCCCCAATAGCCATATCATCAGCTCCTCCGGTTGTGCCACTCAAGAAACCCCNACATTCGCTGTTGCCCCTGCAGGAAATGCCCGATGGACATGGTGCTACTAGGGTTCAAGTTCCCTTCTCATTGCAGGACCTTAGACAAATAAAGGGGGACCTAGGCAAGTTCTCTGATGACCCTGATAGATATATAGAGGCTTTCCAAAATTTAACCCAAGTGTTTAATCTTACATGGAGAGATGCTATGCTACTCTTAAGCCAAACCCTAACTGCTGCCGAGAAACAGGCAGCCCTACAGGCAGCAGAGANATTCGGAGACAAACAGTATCTCCTATAGCCAGTCAAAAAGAAACCCAGTCAAAGNGAAAGAGGTAAAAAAGAGACAGGATCCCCATTCCCAATAGGAAGAGAAACAGTGCCCCTTGAAAACCCTAATTGGAGCCCTAGTGATCCCATAGATGAGTGGAAAAGAAAACACTTTCTGATGTGCATATTAGAAGGCTTGCAAAGAACCAGAACCAAACCTCTTAATTACTCTAAACTGTCCNTGTTAAATCAGAAACCAGATGAAAATCCCTCGGCCTTTTTGGAAAGGCTGAGAGAAGCTTTAGTGAAACACACCTCCCTGTCTCCCGATTCAATAAAGAACAGGTTTATTACTCAGGCAGCCCCTGATATCGGAAGGAAGTTGCTGAAACAGGCCCTGTCCAAANATCTTTCTAGTTTTTCTCACCCTCAAGTTGAAACTTTGCAGTATGTAAATGACACTCTCCTCTGTGCCCCAACCGAGGAGGTCTCAGGAAGGCACTGAGGCTCTCCTCAATTTCTTAGCTGAAAGGGGATATAGGGTCTCAAAATCTAAAGCTCAGCTCTGTCAGACTTCAGTAAAGTACCTAGGTCTAGTCTTATCAGAAGGGACCAGAGCACCAGGTGAGGAAAGGATTAAGCCCATTTCCTCCTTTCCCTTNCCCAAAACTCTTAACAGTTAAGGGGATTCTTAGGCATTACTGGATTTTGCAGACTGTGGGTACCTGGGTACGGTGAAATAGCTCACCCTTTATACCACCTCATAAAAGAAACTCAAGCAGCTAAAACTCACTCCCTAACTTGGGAACCTAAAACTCAAAAGCCTTTAACCAGCTAAAGCAAGCCTTACTTAAAGCACCAGCCCTCAGTCTTCCCATAGGGAAGGCATTCAGTCTCTATGTATCAGAAAGGAAGGGAATGGCCCTGGGAGTTTTAACTAAGGCTCGAGGTCCAGCTCAACAGCCAGTGGGTTACCTAAGCAAGGAACTTGACTTGGTGGCTAAAGGATGGCCAGCCTGCCTCCGAGCAGTTGCAGCGGTGGCTTTGCTGGTGCCAGAGGCCACCGGGTTAACCATGGGGAATAACTTAACTGTTTGCACCCCACACAGTATAGCAGGACTGCTGTCCTCTAAGGGAAGTCTCTGGCTAACAATCGCCTCCTCAAATATCAAGCTTTGCTGCTAGAGGGATCTGCAGTCCAGTTGAAAACCTGCCCTTGCCTGAACCCAGCCACTTTCTCCCAGAGGAAACTGGAGAACCTGAACATGATTGTGAACAGGTAGTGGTGCAAACCGGTAAAAGAAATGATAAGAATCACTGTTTATATTCTCTGTAAAGTTTTAATTAATGAAAAAGGATTTTCTTAAAGAGCGCTCAGCTTAATTAAAAGTGGATATCCAAGCTATAGGTATATTTAAAAGGCCTTTATGTTTTTCTCTTCNTGGATCTTGTTTTNCTGGAAAAGGNTTTTTTCTCAGTCGACTGAATTACTTTTCTCCATTTTGTCTTGCCACTCTTAATGCACGCATGAGAGGCCCTAAGATAACTTCTGATGGCCTGGGACTCCTTGGGAAAACAGAAAAGGCGCCACGGATCCCATTTTGGGAAAAACCTCTGTTTTCCTCATGGAACCCCAGGAATTAGAGGCGGATAGATCCCTCTCAAAATCTGTTTTTGTCTTCCAGCTATGCCTGTTTATTAGGCCCTAGAAACTGCATTCCTAGCCCTGTTCTTGAAGGGCTCCACCCNGAGGCCAATAATCCAATTAGGAGATTGGCAAATGAAAAATCTACAACTACTGGATCTTCTTCTGTCTGTCTGGTAGTTATATATGTGTTGTGTGTGATGTCTATTAAAAAAGCTCTAATTAATTGGCTTAAAAATAAGCGCTTAGATCAAATATTTTTAAGGGAAAAGTAAAAGCTGTAATGCCTTTTAGTTCACGTGACTTTAATCTTTGAGAAATAAAAACGTCTTAAAGATTATTGGTAAAATACAAATGTCTTCAAAATGTAAATATGTGGTCTAAATTATGCAGGTCAGATACTAGGTTTGCTAAATGTTTTAAGGTTATAAACTGCTTCTTTGGCTTTTGAAAACTGTCGACTTGCCTGCTTTACAATTGGTAAGGCCTGGGGACATATGGAATTAACCACGCCCCTAACTATGCTGGAAAGAGTCAAACCTTATCTGCGCCTAGNACATAATTAAAACAACTTACCAGGTTTTACATTAAAGTTAAAATTGCTAAGAGTTACCATTATAACATGTAATTGAGACTACTGAAAATAGATTTACATGCAAGGTGTGTAAGAACAGTAAAATGTTTTTAGTAAAAGATTATAAGAAGGCATGGAAATGTAAATTTTGCCTAGGGNTAAAGGATTGTTTTAAATTAGATAAAGTAAAAGGTTTAAACAAGTTGTGGAAGGNTTGTAAAAATTAATCTTGCAAAAGAAATTCTGTGTGTGAACATATTGACTAAATTCAAAAGGGTATTATATGGTTTTTCCGTAAATTGAGCATTGAAATAAAAGCACAACAAGGTTTTCTTAAGGCGCTAATCTGCTCTTTAGCAAAATTTGTAAAGGGTTATAAAAGGTTTATAAGAATCTCACCTCATGGTCAAACTGGTTAAGATTGGATAGAATTGTCTATAAGGTTTCATTAAAAATTGGGGTTGACATTAATAGTAAACTAATGCAAGGGTGAAATTTGGCTTTCTCTCTTGAACAGGATTTTCATGTAATAGTAAAGGNTAATGAAAGGTTTTTGCTTTTTNAAATTTTTGAGTCATCATTTTGGCAAAATAAATAACTTATGGTAATCTGGAATTCTATTTCATAATATCAAGTGTTTTAAACCTCTAACATATTTAACAGGCTTCCCAAAATCAAACTTCAGTTTCAAAATTGTCTTTCCTGACCCCTAGCTTTTGGATGCTACAGAGGCCCCTGGAGCATCCAAAAGAGAGGTAAACAGGATTATTTGACATGTTTAGNTACATGGGATTGCCAAAATGATGTTTAATTTCTTCAGGTTATATTTTAGTGAATAATATTAATATATGTTCCAAAATTGTATGGGATTTCTAAAATTCTAATGTCTGAGTATATGCTATCAATCATAATTAAGGTTATTATGTTAAGTTATTGTAAACCACAGAAATAACCAAATTTCTTTGTCAATCGTGTTTTTGACTGTAACTACCCTGGACATTTTGTCATTCACAGACAATTGTCTTGTTTTGATCCTCTTCAAAAGATGGTTTATAATCAGCTATAGGACTTTGACAGGTGCTCTCAAATGCAGGTTTCTGATAACAGAAAAACGTACAGGACTCATGAAGAGCTGAAATGTTCATGAATATCAAGCAGAACAAGAGTTAACGGAATGGACTGAACTAATAGAAAACTGAAGTAATCTTTTTAACTTTTGCTTAAAACATTGCTGATCCTTGTTTTGTTTTTCAGAGTCAAGGAAACTTTTGAGCTATTTACAGCCTTTAACAATTGAGTAAGGTATACTCCTGTGAACAAAATTTGGAGCATGTTTGTTTCTCTCTGCCTGGTTCCTCTAGAATTTGGAAACTANTTGTGAGTATTCTTAACTTACGGCAATATAGTTGTTTGCATCAGTGCAATAAAATCCATTTTCTTTTGCAACAGGACGCAATTGGAGAANACTGGTTGTTTTACCAAGGCTTTGACTGGAAGGGTGTGCTTCCCTTTAAGGAATCAAGCTTGACTTGCAGAGCCAATAAAAGCCCCTTGGGAAAACTGGCCTCATACCTTGTCTACACAGTCCCCGTACAGGGTTCCTAACCTGTGGTGAGTAAAGAATGTCACTTTCTAACAGGCCCAGGAGCCCATGTTCTTGGGACCTCAAGAAGAGAGGAATTTACCCAACTCATAGGTATTTGAGGGTACAAACCCATGGCTGGGCTCGGCTTTAAAAAGTCTTATCTGAGATTCCTTGTGGAACAGAGTTCCATCAAAGCCAATTTAAAAGGCCTATGTAAAAATAATTATTCTTGCTGCACTTTATGCAAATAATCAGGCCAAGTATAAGACTAAAGTTTATTTTGCAAACAACTCAGTCTATCATGATTTGTTTTTAACAAAAATGAGGACTGGAGAGAGAGAAATTATGTTTCAAAACTTATCATACATTTGTCATTAAATTCTAGTCTCATTAGTTGTTTTTAAGTTTTTGCCTACATTTTAGACTAACCCTGCTTATTCCTGTGAACCAACCAGCGATCTCCGGCTGCAGCTCAGAAAAACAAAAAGGGATGGGTAATGTAAAAATCTGGATCAATATTCTAGTTCTGGGCAATTATCCTGCAAATCCTGCCAGGTGATGGGAGTAAATAGGGTGCCCATAACCCGGAGGTTTCTTTTTTTGGGAAAATAAGACCAAGGGAGCTAACCAAAGCCAAGCCCCATGCACCCAAATCTTAGCAGGCATAACTATAGCCACCAGTTATCTGGGCGTGTCGGCAGCCTCGGGATTTTTGAGCTCGTCCTTACCCCCCTTGTTTCGTTTTGATACATGTCTTCTAATAACCCGGTTTGTCTCTTCTCGCCTTCAGGCCATCAAACTCCAAATGGTCATGCAACCGGAGCCNCGNATGANCGCGCCTTTCTNCCGGGGACCCTTAGATNGGCCTCNGGGGGAGNCCTGACTGCTGTTCCCNAAACAGCGCCCCCCGTCAGCAGGAAGCAGTTAGAAAGATCANCGCCCANTCTCCCTAACGGCAGTTAGGGTCTCCACTCCTGAGGGGGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR25-int | CTCF | 943 | 957 | - | 20.70 | TCCACTAGGTGGCGC |
| LTR25-int | SVP | 6794 | 6809 | - | 19.83 | TTCCCAAAAAAAGAAA |
| LTR25-int | AGL15 | 6794 | 6809 | + | 19.17 | TTTCTTTTTTTGGGAA |
| LTR25-int | SOC1 | 6794 | 6806 | + | 18.81 | TTTCTTTTTTTGG |
| LTR25-int | AGL27 | 6793 | 6806 | + | 18.68 | GTTTCTTTTTTTGG |
| LTR25-int | AT1G72740 | 2519 | 2529 | - | 18.11 | AATTAGGGTTT |
| LTR25-int | FLC | 6793 | 6806 | - | 17.90 | CCAAAAAAAGAAAC |
| LTR25-int | PI | 6793 | 6806 | - | 17.79 | CCAAAAAAAGAAAC |
| LTR25-int | AP3 | 6794 | 6806 | - | 17.73 | CCAAAAAAAGAAA |
| LTR25-int | AP1 | 6794 | 6806 | - | 17.60 | CCAAAAAAAGAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
