LTR25-int
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000468 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7188 |
| Kimura value | 14.80 |
| Tau index | 0.0000 |
| Description | Internal region of ERV1 endogenous retrovirus, LTR25-int subfamily |
| Comment | MER4 group. |
| Sequence |
TATTTTGGTGCATTGGCCGGGAAAGAAAGGAATTCATCAGAAGGGTGAGTAAGAGCGGACCTTTAACTCTTTACTTTCATTTCCGAGGCTTGTCCTCAGTTTTTTTTTNNNNNNNCTCAAGAANCAAACAAAACACTGGGCCCCTGTCAGCCAGTTAAAAGACNAATAGCGTGGCTGCCAGCCTTANAAGACTCAGGGGACAGGCTTGCTGGAGAGGACTTTGTCAATCCCCCATCGCCCTCGGGTGTTGGGAATGTTGGCTCTGTTCCAATCCAGTTTCCTTTCACGGAGGGCCTAGCCGTCGCGTGGGGTTGGAAGGAGGTCCTAGGGCAACTGAAGGTTTCTGGCCGAGGCTACACCTCGGTGTTACCTGAAGGCCCCTGGACTAACTCCAGTCCCCGACAGCCCATNCAGGGTGTCGGCACNAGGACTTCCAGTCTTTTCTATCGCATTTTCCTTCTTTCTTTTCGTGGCTATCATGTCTCCTATCCCTTCTTTGTATGCAATGTTGNGGGTGTTTTTGCAACCTGGGGATATAATCTTGCTGGGTAAAGTCAGTCAGTGCCTTAGTAATCAGGAATGTAACTCAAAGAATTGCTGTTTTTGTGATTTCCTNGAAACAGGGGGANTTCAAGATTTCAGTCTAAATTTTCACCTAGTAAGGGCCTTTTTGTCCCCCAATAATAGACATTCATGGCACTGTATGGGAGGATATTTCACCCCGAGTGAATACCCTCCTCTCCATTTGGGTTGTTTTTTTTCCTCCATGTAAAAGCTCAGCACTGCCCAATGAATCTAAACAGTTCCTTTATGAGACAAGTTAATTTTCTTCTGCTGGGGGGCATACTATGGGGACAGCCTATCAAACCCCAAACCTCTCTTTCTAACTTTTGCCTGGAAAGAATTTAGTCAGAGTTTTTACCTAACATTTCNAACCCTACAGCGCCACCTAGTGGAATGGGATTTTTCTCCGTGGGGAGCCTTGTCGGCCCTTTGCCCNAAACCTCTAGTTCCCCAATTCTTTTCCCTCTTACGTCCCTCTATCAGTGATCAGGCCCCATGCCCTATTTGTAGACAGAAAAACTCCACTTTCAACAGCCGGGAGGAAGCCACCCTGANAAGACAGATCTTGCCTCAGTACTGTCCCCATCAAAGGAAGGACAGCCATTCAATCCTTACGCTCTTTTCGAGGCACCTGTTCTGCATCCAACTACATTGGNATTTAAACAAAAAAGGGATTTTATGTTTGGAAGTCAATCGGTCCCATTCTCTGGGATTTCGATNTTTCNCTGGGGCCATAGCAAGGGAAGCCAGAGATAGTGTTAGGACACTCCCTCCATTAAAGNGTTTGCCCAAATCCAACTACTACATAATCTCTCCCGGGCCCCTGGGGTACCTTGGGAGCCTTTTGGGCCGAGTGGGTCTAGGAAACCAGCAGGGCGGAAAGCTAGGGCCTCGCGCAGGTAAGCACATGACTANTCCTGCCGACTAGCTCCTCCGGATCCATGGGTGAAGGTCACGCTTGCATCCATGGGTGGCACCTATGATGGTCGCCGGGACCCAGAGGAGANGGAAGGAAAGAGGAGAAGGGGGACGCCCTTTCTCTCTTTCCCTCCACCCTGGGTCACNCCGAAAGGAGGAAGGAGACTAAGGGACGCCTTTGTCTCCCCTCTCTTTCTAGATGGGTAACAAACCATCTNCAGCCTGCACTCCCCTCGAGTGCATTCTGAANCACTGGAACTCCTTTGACCCTGAGACTCTGAAGAAAAAACGGCTTATATTCTATTGCACAAGGGCATGGCCATCTTACCAGGGGAGACAGAAGGCCTGGCCTTCTGAGGGAAGCGTTAATTTCAATACTATCCAACAACTAGATCTTTTCTGGCGGGAGGGAAATGGCGGTTCCCTATGTACAAGCTTTCTTTGCCCTGCGAGACAACCCAGATCTTTGTAAGCATTGTAAAATTGACCCTGCCCTCTTGGCAGCCATATCAGGCAAGCCTACAAAGGATAATTCCCCAAAGTCAGAGAGACAAACCCTTGGGGAACCCTCAAATGCAACTTCTGGGTGCCCTACCTGCCCCCCTTATCCGGGGCCCCCAATAGCCATATCATCAGCTCCTCCGGTTGTGCCACTCAAGAAACCCCNACATTCGCTGTTGCCCCTGCAGGAAATGCCCGATGGACATGGTGCTACTAGGGTTCAAGTTCCCTTCTCATTGCAGGACCTTAGACAAATAAAGGGGGACCTAGGCAAGTTCTCTGATGACCCTGATAGATATATAGAGGCTTTCCAAAATTTAACCCAAGTGTTTAATCTTACATGGAGAGATGCTATGCTACTCTTAAGCCAAACCCTAACTGCTGCCGAGAAACAGGCAGCCCTACAGGCAGCAGAGANATTCGGAGACAAACAGTATCTCCTATAGCCAGTCAAAAAGAAACCCAGTCAAAGNGAAAGAGGTAAAAAAGAGACAGGATCCCCATTCCCAATAGGAAGAGAAACAGTGCCCCTTGAAAACCCTAATTGGAGCCCTAGTGATCCCATAGATGAGTGGAAAAGAAAACACTTTCTGATGTGCATATTAGAAGGCTTGCAAAGAACCAGAACCAAACCTCTTAATTACTCTAAACTGTCCNTGTTAAATCAGAAACCAGATGAAAATCCCTCGGCCTTTTTGGAAAGGCTGAGAGAAGCTTTAGTGAAACACACCTCCCTGTCTCCCGATTCAATAAAGAACAGGTTTATTACTCAGGCAGCCCCTGATATCGGAAGGAAGTTGCTGAAACAGGCCCTGTCCAAANATCTTTCTAGTTTTTCTCACCCTCAAGTTGAAACTTTGCAGTATGTAAATGACACTCTCCTCTGTGCCCCAACCGAGGAGGTCTCAGGAAGGCACTGAGGCTCTCCTCAATTTCTTAGCTGAAAGGGGATATAGGGTCTCAAAATCTAAAGCTCAGCTCTGTCAGACTTCAGTAAAGTACCTAGGTCTAGTCTTATCAGAAGGGACCAGAGCACCAGGTGAGGAAAGGATTAAGCCCATTTCCTCCTTTCCCTTNCCCAAAACTCTTAACAGTTAAGGGGATTCTTAGGCATTACTGGATTTTGCAGACTGTGGGTACCTGGGTACGGTGAAATAGCTCACCCTTTATACCACCTCATAAAAGAAACTCAAGCAGCTAAAACTCACTCCCTAACTTGGGAACCTAAAACTCAAAAGCCTTTAACCAGCTAAAGCAAGCCTTACTTAAAGCACCAGCCCTCAGTCTTCCCATAGGGAAGGCATTCAGTCTCTATGTATCAGAAAGGAAGGGAATGGCCCTGGGAGTTTTAACTAAGGCTCGAGGTCCAGCTCAACAGCCAGTGGGTTACCTAAGCAAGGAACTTGACTTGGTGGCTAAAGGATGGCCAGCCTGCCTCCGAGCAGTTGCAGCGGTGGCTTTGCTGGTGCCAGAGGCCACCGGGTTAACCATGGGGAATAACTTAACTGTTTGCACCCCACACAGTATAGCAGGACTGCTGTCCTCTAAGGGAAGTCTCTGGCTAACAATCGCCTCCTCAAATATCAAGCTTTGCTGCTAGAGGGATCTGCAGTCCAGTTGAAAACCTGCCCTTGCCTGAACCCAGCCACTTTCTCCCAGAGGAAACTGGAGAACCTGAACATGATTGTGAACAGGTAGTGGTGCAAACCGGTAAAAGAAATGATAAGAATCACTGTTTATATTCTCTGTAAAGTTTTAATTAATGAAAAAGGATTTTCTTAAAGAGCGCTCAGCTTAATTAAAAGTGGATATCCAAGCTATAGGTATATTTAAAAGGCCTTTATGTTTTTCTCTTCNTGGATCTTGTTTTNCTGGAAAAGGNTTTTTTCTCAGTCGACTGAATTACTTTTCTCCATTTTGTCTTGCCACTCTTAATGCACGCATGAGAGGCCCTAAGATAACTTCTGATGGCCTGGGACTCCTTGGGAAAACAGAAAAGGCGCCACGGATCCCATTTTGGGAAAAACCTCTGTTTTCCTCATGGAACCCCAGGAATTAGAGGCGGATAGATCCCTCTCAAAATCTGTTTTTGTCTTCCAGCTATGCCTGTTTATTAGGCCCTAGAAACTGCATTCCTAGCCCTGTTCTTGAAGGGCTCCACCCNGAGGCCAATAATCCAATTAGGAGATTGGCAAATGAAAAATCTACAACTACTGGATCTTCTTCTGTCTGTCTGGTAGTTATATATGTGTTGTGTGTGATGTCTATTAAAAAAGCTCTAATTAATTGGCTTAAAAATAAGCGCTTAGATCAAATATTTTTAAGGGAAAAGTAAAAGCTGTAATGCCTTTTAGTTCACGTGACTTTAATCTTTGAGAAATAAAAACGTCTTAAAGATTATTGGTAAAATACAAATGTCTTCAAAATGTAAATATGTGGTCTAAATTATGCAGGTCAGATACTAGGTTTGCTAAATGTTTTAAGGTTATAAACTGCTTCTTTGGCTTTTGAAAACTGTCGACTTGCCTGCTTTACAATTGGTAAGGCCTGGGGACATATGGAATTAACCACGCCCCTAACTATGCTGGAAAGAGTCAAACCTTATCTGCGCCTAGNACATAATTAAAACAACTTACCAGGTTTTACATTAAAGTTAAAATTGCTAAGAGTTACCATTATAACATGTAATTGAGACTACTGAAAATAGATTTACATGCAAGGTGTGTAAGAACAGTAAAATGTTTTTAGTAAAAGATTATAAGAAGGCATGGAAATGTAAATTTTGCCTAGGGNTAAAGGATTGTTTTAAATTAGATAAAGTAAAAGGTTTAAACAAGTTGTGGAAGGNTTGTAAAAATTAATCTTGCAAAAGAAATTCTGTGTGTGAACATATTGACTAAATTCAAAAGGGTATTATATGGTTTTTCCGTAAATTGAGCATTGAAATAAAAGCACAACAAGGTTTTCTTAAGGCGCTAATCTGCTCTTTAGCAAAATTTGTAAAGGGTTATAAAAGGTTTATAAGAATCTCACCTCATGGTCAAACTGGTTAAGATTGGATAGAATTGTCTATAAGGTTTCATTAAAAATTGGGGTTGACATTAATAGTAAACTAATGCAAGGGTGAAATTTGGCTTTCTCTCTTGAACAGGATTTTCATGTAATAGTAAAGGNTAATGAAAGGTTTTTGCTTTTTNAAATTTTTGAGTCATCATTTTGGCAAAATAAATAACTTATGGTAATCTGGAATTCTATTTCATAATATCAAGTGTTTTAAACCTCTAACATATTTAACAGGCTTCCCAAAATCAAACTTCAGTTTCAAAATTGTCTTTCCTGACCCCTAGCTTTTGGATGCTACAGAGGCCCCTGGAGCATCCAAAAGAGAGGTAAACAGGATTATTTGACATGTTTAGNTACATGGGATTGCCAAAATGATGTTTAATTTCTTCAGGTTATATTTTAGTGAATAATATTAATATATGTTCCAAAATTGTATGGGATTTCTAAAATTCTAATGTCTGAGTATATGCTATCAATCATAATTAAGGTTATTATGTTAAGTTATTGTAAACCACAGAAATAACCAAATTTCTTTGTCAATCGTGTTTTTGACTGTAACTACCCTGGACATTTTGTCATTCACAGACAATTGTCTTGTTTTGATCCTCTTCAAAAGATGGTTTATAATCAGCTATAGGACTTTGACAGGTGCTCTCAAATGCAGGTTTCTGATAACAGAAAAACGTACAGGACTCATGAAGAGCTGAAATGTTCATGAATATCAAGCAGAACAAGAGTTAACGGAATGGACTGAACTAATAGAAAACTGAAGTAATCTTTTTAACTTTTGCTTAAAACATTGCTGATCCTTGTTTTGTTTTTCAGAGTCAAGGAAACTTTTGAGCTATTTACAGCCTTTAACAATTGAGTAAGGTATACTCCTGTGAACAAAATTTGGAGCATGTTTGTTTCTCTCTGCCTGGTTCCTCTAGAATTTGGAAACTANTTGTGAGTATTCTTAACTTACGGCAATATAGTTGTTTGCATCAGTGCAATAAAATCCATTTTCTTTTGCAACAGGACGCAATTGGAGAANACTGGTTGTTTTACCAAGGCTTTGACTGGAAGGGTGTGCTTCCCTTTAAGGAATCAAGCTTGACTTGCAGAGCCAATAAAAGCCCCTTGGGAAAACTGGCCTCATACCTTGTCTACACAGTCCCCGTACAGGGTTCCTAACCTGTGGTGAGTAAAGAATGTCACTTTCTAACAGGCCCAGGAGCCCATGTTCTTGGGACCTCAAGAAGAGAGGAATTTACCCAACTCATAGGTATTTGAGGGTACAAACCCATGGCTGGGCTCGGCTTTAAAAAGTCTTATCTGAGATTCCTTGTGGAACAGAGTTCCATCAAAGCCAATTTAAAAGGCCTATGTAAAAATAATTATTCTTGCTGCACTTTATGCAAATAATCAGGCCAAGTATAAGACTAAAGTTTATTTTGCAAACAACTCAGTCTATCATGATTTGTTTTTAACAAAAATGAGGACTGGAGAGAGAGAAATTATGTTTCAAAACTTATCATACATTTGTCATTAAATTCTAGTCTCATTAGTTGTTTTTAAGTTTTTGCCTACATTTTAGACTAACCCTGCTTATTCCTGTGAACCAACCAGCGATCTCCGGCTGCAGCTCAGAAAAACAAAAAGGGATGGGTAATGTAAAAATCTGGATCAATATTCTAGTTCTGGGCAATTATCCTGCAAATCCTGCCAGGTGATGGGAGTAAATAGGGTGCCCATAACCCGGAGGTTTCTTTTTTTGGGAAAATAAGACCAAGGGAGCTAACCAAAGCCAAGCCCCATGCACCCAAATCTTAGCAGGCATAACTATAGCCACCAGTTATCTGGGCGTGTCGGCAGCCTCGGGATTTTTGAGCTCGTCCTTACCCCCCTTGTTTCGTTTTGATACATGTCTTCTAATAACCCGGTTTGTCTCTTCTCGCCTTCAGGCCATCAAACTCCAAATGGTCATGCAACCGGAGCCNCGNATGANCGCGCCTTTCTNCCGGGGACCCTTAGATNGGCCTCNGGGGGAGNCCTGACTGCTGTTCCCNAAACAGCGCCCCCCGTCAGCAGGAAGCAGTTAGAAAGATCANCGCCCANTCTCCCTAACGGCAGTTAGGGTCTCCACTCCTGAGGGGGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR25-int | Gsx | 6569 | 6588 | - | 16.48 | ACTAGAATTTAATGACAAAT |
| LTR25-int | SP3 | 4550 | 4560 | + | 16.46 | ACCACGCCCCT |
| LTR25-int | ETV5::FOXI1 | 7112 | 7123 | + | 16.42 | GTCAGCAGGAAG |
| LTR25-int | RAMOSA1 | 6532 | 6545 | + | 16.36 | TGGAGAGAGAGAAA |
| LTR25-int | Prdm4 | 4103 | 4113 | + | 16.33 | CCTAGAAACTG |
| LTR25-int | DREB2G | 3427 | 3440 | + | 16.30 | AGTTGCAGCGGTGG |
| LTR25-int | ZNF320 | 3116 | 3135 | + | 16.29 | GTGGGTACCTGGGTACGGTG |
| LTR25-int | ARF7 | 982 | 990 | - | 16.25 | GCCGACAAG |
| LTR25-int | KLF10 | 4551 | 4559 | - | 16.15 | GGGGCGTGG |
| LTR25-int | ZNF189 | 7087 | 7095 | + | 16.13 | TGCTGTTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
