LTR25-int
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000468 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7188 |
| Kimura value | 14.80 |
| Tau index | 0.0000 |
| Description | Internal region of ERV1 endogenous retrovirus, LTR25-int subfamily |
| Comment | MER4 group. |
| Sequence |
TATTTTGGTGCATTGGCCGGGAAAGAAAGGAATTCATCAGAAGGGTGAGTAAGAGCGGACCTTTAACTCTTTACTTTCATTTCCGAGGCTTGTCCTCAGTTTTTTTTTNNNNNNNCTCAAGAANCAAACAAAACACTGGGCCCCTGTCAGCCAGTTAAAAGACNAATAGCGTGGCTGCCAGCCTTANAAGACTCAGGGGACAGGCTTGCTGGAGAGGACTTTGTCAATCCCCCATCGCCCTCGGGTGTTGGGAATGTTGGCTCTGTTCCAATCCAGTTTCCTTTCACGGAGGGCCTAGCCGTCGCGTGGGGTTGGAAGGAGGTCCTAGGGCAACTGAAGGTTTCTGGCCGAGGCTACACCTCGGTGTTACCTGAAGGCCCCTGGACTAACTCCAGTCCCCGACAGCCCATNCAGGGTGTCGGCACNAGGACTTCCAGTCTTTTCTATCGCATTTTCCTTCTTTCTTTTCGTGGCTATCATGTCTCCTATCCCTTCTTTGTATGCAATGTTGNGGGTGTTTTTGCAACCTGGGGATATAATCTTGCTGGGTAAAGTCAGTCAGTGCCTTAGTAATCAGGAATGTAACTCAAAGAATTGCTGTTTTTGTGATTTCCTNGAAACAGGGGGANTTCAAGATTTCAGTCTAAATTTTCACCTAGTAAGGGCCTTTTTGTCCCCCAATAATAGACATTCATGGCACTGTATGGGAGGATATTTCACCCCGAGTGAATACCCTCCTCTCCATTTGGGTTGTTTTTTTTCCTCCATGTAAAAGCTCAGCACTGCCCAATGAATCTAAACAGTTCCTTTATGAGACAAGTTAATTTTCTTCTGCTGGGGGGCATACTATGGGGACAGCCTATCAAACCCCAAACCTCTCTTTCTAACTTTTGCCTGGAAAGAATTTAGTCAGAGTTTTTACCTAACATTTCNAACCCTACAGCGCCACCTAGTGGAATGGGATTTTTCTCCGTGGGGAGCCTTGTCGGCCCTTTGCCCNAAACCTCTAGTTCCCCAATTCTTTTCCCTCTTACGTCCCTCTATCAGTGATCAGGCCCCATGCCCTATTTGTAGACAGAAAAACTCCACTTTCAACAGCCGGGAGGAAGCCACCCTGANAAGACAGATCTTGCCTCAGTACTGTCCCCATCAAAGGAAGGACAGCCATTCAATCCTTACGCTCTTTTCGAGGCACCTGTTCTGCATCCAACTACATTGGNATTTAAACAAAAAAGGGATTTTATGTTTGGAAGTCAATCGGTCCCATTCTCTGGGATTTCGATNTTTCNCTGGGGCCATAGCAAGGGAAGCCAGAGATAGTGTTAGGACACTCCCTCCATTAAAGNGTTTGCCCAAATCCAACTACTACATAATCTCTCCCGGGCCCCTGGGGTACCTTGGGAGCCTTTTGGGCCGAGTGGGTCTAGGAAACCAGCAGGGCGGAAAGCTAGGGCCTCGCGCAGGTAAGCACATGACTANTCCTGCCGACTAGCTCCTCCGGATCCATGGGTGAAGGTCACGCTTGCATCCATGGGTGGCACCTATGATGGTCGCCGGGACCCAGAGGAGANGGAAGGAAAGAGGAGAAGGGGGACGCCCTTTCTCTCTTTCCCTCCACCCTGGGTCACNCCGAAAGGAGGAAGGAGACTAAGGGACGCCTTTGTCTCCCCTCTCTTTCTAGATGGGTAACAAACCATCTNCAGCCTGCACTCCCCTCGAGTGCATTCTGAANCACTGGAACTCCTTTGACCCTGAGACTCTGAAGAAAAAACGGCTTATATTCTATTGCACAAGGGCATGGCCATCTTACCAGGGGAGACAGAAGGCCTGGCCTTCTGAGGGAAGCGTTAATTTCAATACTATCCAACAACTAGATCTTTTCTGGCGGGAGGGAAATGGCGGTTCCCTATGTACAAGCTTTCTTTGCCCTGCGAGACAACCCAGATCTTTGTAAGCATTGTAAAATTGACCCTGCCCTCTTGGCAGCCATATCAGGCAAGCCTACAAAGGATAATTCCCCAAAGTCAGAGAGACAAACCCTTGGGGAACCCTCAAATGCAACTTCTGGGTGCCCTACCTGCCCCCCTTATCCGGGGCCCCCAATAGCCATATCATCAGCTCCTCCGGTTGTGCCACTCAAGAAACCCCNACATTCGCTGTTGCCCCTGCAGGAAATGCCCGATGGACATGGTGCTACTAGGGTTCAAGTTCCCTTCTCATTGCAGGACCTTAGACAAATAAAGGGGGACCTAGGCAAGTTCTCTGATGACCCTGATAGATATATAGAGGCTTTCCAAAATTTAACCCAAGTGTTTAATCTTACATGGAGAGATGCTATGCTACTCTTAAGCCAAACCCTAACTGCTGCCGAGAAACAGGCAGCCCTACAGGCAGCAGAGANATTCGGAGACAAACAGTATCTCCTATAGCCAGTCAAAAAGAAACCCAGTCAAAGNGAAAGAGGTAAAAAAGAGACAGGATCCCCATTCCCAATAGGAAGAGAAACAGTGCCCCTTGAAAACCCTAATTGGAGCCCTAGTGATCCCATAGATGAGTGGAAAAGAAAACACTTTCTGATGTGCATATTAGAAGGCTTGCAAAGAACCAGAACCAAACCTCTTAATTACTCTAAACTGTCCNTGTTAAATCAGAAACCAGATGAAAATCCCTCGGCCTTTTTGGAAAGGCTGAGAGAAGCTTTAGTGAAACACACCTCCCTGTCTCCCGATTCAATAAAGAACAGGTTTATTACTCAGGCAGCCCCTGATATCGGAAGGAAGTTGCTGAAACAGGCCCTGTCCAAANATCTTTCTAGTTTTTCTCACCCTCAAGTTGAAACTTTGCAGTATGTAAATGACACTCTCCTCTGTGCCCCAACCGAGGAGGTCTCAGGAAGGCACTGAGGCTCTCCTCAATTTCTTAGCTGAAAGGGGATATAGGGTCTCAAAATCTAAAGCTCAGCTCTGTCAGACTTCAGTAAAGTACCTAGGTCTAGTCTTATCAGAAGGGACCAGAGCACCAGGTGAGGAAAGGATTAAGCCCATTTCCTCCTTTCCCTTNCCCAAAACTCTTAACAGTTAAGGGGATTCTTAGGCATTACTGGATTTTGCAGACTGTGGGTACCTGGGTACGGTGAAATAGCTCACCCTTTATACCACCTCATAAAAGAAACTCAAGCAGCTAAAACTCACTCCCTAACTTGGGAACCTAAAACTCAAAAGCCTTTAACCAGCTAAAGCAAGCCTTACTTAAAGCACCAGCCCTCAGTCTTCCCATAGGGAAGGCATTCAGTCTCTATGTATCAGAAAGGAAGGGAATGGCCCTGGGAGTTTTAACTAAGGCTCGAGGTCCAGCTCAACAGCCAGTGGGTTACCTAAGCAAGGAACTTGACTTGGTGGCTAAAGGATGGCCAGCCTGCCTCCGAGCAGTTGCAGCGGTGGCTTTGCTGGTGCCAGAGGCCACCGGGTTAACCATGGGGAATAACTTAACTGTTTGCACCCCACACAGTATAGCAGGACTGCTGTCCTCTAAGGGAAGTCTCTGGCTAACAATCGCCTCCTCAAATATCAAGCTTTGCTGCTAGAGGGATCTGCAGTCCAGTTGAAAACCTGCCCTTGCCTGAACCCAGCCACTTTCTCCCAGAGGAAACTGGAGAACCTGAACATGATTGTGAACAGGTAGTGGTGCAAACCGGTAAAAGAAATGATAAGAATCACTGTTTATATTCTCTGTAAAGTTTTAATTAATGAAAAAGGATTTTCTTAAAGAGCGCTCAGCTTAATTAAAAGTGGATATCCAAGCTATAGGTATATTTAAAAGGCCTTTATGTTTTTCTCTTCNTGGATCTTGTTTTNCTGGAAAAGGNTTTTTTCTCAGTCGACTGAATTACTTTTCTCCATTTTGTCTTGCCACTCTTAATGCACGCATGAGAGGCCCTAAGATAACTTCTGATGGCCTGGGACTCCTTGGGAAAACAGAAAAGGCGCCACGGATCCCATTTTGGGAAAAACCTCTGTTTTCCTCATGGAACCCCAGGAATTAGAGGCGGATAGATCCCTCTCAAAATCTGTTTTTGTCTTCCAGCTATGCCTGTTTATTAGGCCCTAGAAACTGCATTCCTAGCCCTGTTCTTGAAGGGCTCCACCCNGAGGCCAATAATCCAATTAGGAGATTGGCAAATGAAAAATCTACAACTACTGGATCTTCTTCTGTCTGTCTGGTAGTTATATATGTGTTGTGTGTGATGTCTATTAAAAAAGCTCTAATTAATTGGCTTAAAAATAAGCGCTTAGATCAAATATTTTTAAGGGAAAAGTAAAAGCTGTAATGCCTTTTAGTTCACGTGACTTTAATCTTTGAGAAATAAAAACGTCTTAAAGATTATTGGTAAAATACAAATGTCTTCAAAATGTAAATATGTGGTCTAAATTATGCAGGTCAGATACTAGGTTTGCTAAATGTTTTAAGGTTATAAACTGCTTCTTTGGCTTTTGAAAACTGTCGACTTGCCTGCTTTACAATTGGTAAGGCCTGGGGACATATGGAATTAACCACGCCCCTAACTATGCTGGAAAGAGTCAAACCTTATCTGCGCCTAGNACATAATTAAAACAACTTACCAGGTTTTACATTAAAGTTAAAATTGCTAAGAGTTACCATTATAACATGTAATTGAGACTACTGAAAATAGATTTACATGCAAGGTGTGTAAGAACAGTAAAATGTTTTTAGTAAAAGATTATAAGAAGGCATGGAAATGTAAATTTTGCCTAGGGNTAAAGGATTGTTTTAAATTAGATAAAGTAAAAGGTTTAAACAAGTTGTGGAAGGNTTGTAAAAATTAATCTTGCAAAAGAAATTCTGTGTGTGAACATATTGACTAAATTCAAAAGGGTATTATATGGTTTTTCCGTAAATTGAGCATTGAAATAAAAGCACAACAAGGTTTTCTTAAGGCGCTAATCTGCTCTTTAGCAAAATTTGTAAAGGGTTATAAAAGGTTTATAAGAATCTCACCTCATGGTCAAACTGGTTAAGATTGGATAGAATTGTCTATAAGGTTTCATTAAAAATTGGGGTTGACATTAATAGTAAACTAATGCAAGGGTGAAATTTGGCTTTCTCTCTTGAACAGGATTTTCATGTAATAGTAAAGGNTAATGAAAGGTTTTTGCTTTTTNAAATTTTTGAGTCATCATTTTGGCAAAATAAATAACTTATGGTAATCTGGAATTCTATTTCATAATATCAAGTGTTTTAAACCTCTAACATATTTAACAGGCTTCCCAAAATCAAACTTCAGTTTCAAAATTGTCTTTCCTGACCCCTAGCTTTTGGATGCTACAGAGGCCCCTGGAGCATCCAAAAGAGAGGTAAACAGGATTATTTGACATGTTTAGNTACATGGGATTGCCAAAATGATGTTTAATTTCTTCAGGTTATATTTTAGTGAATAATATTAATATATGTTCCAAAATTGTATGGGATTTCTAAAATTCTAATGTCTGAGTATATGCTATCAATCATAATTAAGGTTATTATGTTAAGTTATTGTAAACCACAGAAATAACCAAATTTCTTTGTCAATCGTGTTTTTGACTGTAACTACCCTGGACATTTTGTCATTCACAGACAATTGTCTTGTTTTGATCCTCTTCAAAAGATGGTTTATAATCAGCTATAGGACTTTGACAGGTGCTCTCAAATGCAGGTTTCTGATAACAGAAAAACGTACAGGACTCATGAAGAGCTGAAATGTTCATGAATATCAAGCAGAACAAGAGTTAACGGAATGGACTGAACTAATAGAAAACTGAAGTAATCTTTTTAACTTTTGCTTAAAACATTGCTGATCCTTGTTTTGTTTTTCAGAGTCAAGGAAACTTTTGAGCTATTTACAGCCTTTAACAATTGAGTAAGGTATACTCCTGTGAACAAAATTTGGAGCATGTTTGTTTCTCTCTGCCTGGTTCCTCTAGAATTTGGAAACTANTTGTGAGTATTCTTAACTTACGGCAATATAGTTGTTTGCATCAGTGCAATAAAATCCATTTTCTTTTGCAACAGGACGCAATTGGAGAANACTGGTTGTTTTACCAAGGCTTTGACTGGAAGGGTGTGCTTCCCTTTAAGGAATCAAGCTTGACTTGCAGAGCCAATAAAAGCCCCTTGGGAAAACTGGCCTCATACCTTGTCTACACAGTCCCCGTACAGGGTTCCTAACCTGTGGTGAGTAAAGAATGTCACTTTCTAACAGGCCCAGGAGCCCATGTTCTTGGGACCTCAAGAAGAGAGGAATTTACCCAACTCATAGGTATTTGAGGGTACAAACCCATGGCTGGGCTCGGCTTTAAAAAGTCTTATCTGAGATTCCTTGTGGAACAGAGTTCCATCAAAGCCAATTTAAAAGGCCTATGTAAAAATAATTATTCTTGCTGCACTTTATGCAAATAATCAGGCCAAGTATAAGACTAAAGTTTATTTTGCAAACAACTCAGTCTATCATGATTTGTTTTTAACAAAAATGAGGACTGGAGAGAGAGAAATTATGTTTCAAAACTTATCATACATTTGTCATTAAATTCTAGTCTCATTAGTTGTTTTTAAGTTTTTGCCTACATTTTAGACTAACCCTGCTTATTCCTGTGAACCAACCAGCGATCTCCGGCTGCAGCTCAGAAAAACAAAAAGGGATGGGTAATGTAAAAATCTGGATCAATATTCTAGTTCTGGGCAATTATCCTGCAAATCCTGCCAGGTGATGGGAGTAAATAGGGTGCCCATAACCCGGAGGTTTCTTTTTTTGGGAAAATAAGACCAAGGGAGCTAACCAAAGCCAAGCCCCATGCACCCAAATCTTAGCAGGCATAACTATAGCCACCAGTTATCTGGGCGTGTCGGCAGCCTCGGGATTTTTGAGCTCGTCCTTACCCCCCTTGTTTCGTTTTGATACATGTCTTCTAATAACCCGGTTTGTCTCTTCTCGCCTTCAGGCCATCAAACTCCAAATGGTCATGCAACCGGAGCCNCGNATGANCGCGCCTTTCTNCCGGGGACCCTTAGATNGGCCTCNGGGGGAGNCCTGACTGCTGTTCCCNAAACAGCGCCCCCCGTCAGCAGGAAGCAGTTAGAAAGATCANCGCCCANTCTCCCTAACGGCAGTTAGGGTCTCCACTCCTGAGGGGGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR25-int | ZNF682 | 6834 | 6844 | + | 17.37 | AGCCAAGCCCC |
| LTR25-int | ZSCAN29 | 6192 | 6202 | + | 17.13 | TGTCTACACAG |
| LTR25-int | ZNF85 | 5814 | 5825 | - | 17.06 | AAGATTACTTCA |
| LTR25-int | TRB2 | 2519 | 2529 | + | 17.03 | AAACCCTAATT |
| LTR25-int | GATA1::TAL1 | 2998 | 3014 | + | 17.02 | TTATCAGAAGGGACCAG |
| LTR25-int | MYB27 | 920 | 931 | - | 16.94 | AAATGTTAGGTA |
| LTR25-int | CTCF | 943 | 952 | - | 16.84 | TAGGTGGCGC |
| LTR25-int | DOF5.8 | 4798 | 4816 | - | 16.82 | TTTAAACCTTTTACTTTAT |
| LTR25-int | AT1G72740 | 2353 | 2363 | - | 16.67 | AGTTAGGGTTT |
| LTR25-int | nub | 6443 | 6453 | + | 16.49 | TATGCAAATAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
