LTR14C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000412 |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 587 |
| Kimura value | 5.32 |
| Tau index | 0.9690 |
| Description | LTR14C (Long Terminal Repeat) for HERVK14C endogenous retrovirus |
| Comment | Copies present at orthologous sites in old world monkeys, but absent from new world monkeys. |
| Sequence |
TGTGGGAAAGAGAGTTTCTGGGGTGCCAGNTGAGTTGGTCTCCCCTGTGTGAGACACCCATGGGGAGCCATGGGCGGCCTCTGAGGAGAAAAGTCTCCTTATTGCCTTCATGTCTTTATGCCCCGAGAGCATAACCGCTCAGCGGCATTCCACAGGTTGCTCAGGGAGATAACACTCCCTTGAAGCAGTGGAGTATAATCAAACATCTTGGCTCCTCCTGAAACCCGCTCCCACCCGTTTCAGTCCCGATAAGTTAAAGATCTTAAGTAGTTTAGACACACGCCTTTGCTCAAGGAAATTCACAGAAACCGCCACTGCTATACATCTTATCGAATGACTCACGAGTTCTCCTTCACTGATTAATCCTTTTCCTCATCCCTTCCTCCCCCTCCCATCTGCCCTAAGAACAAAGAGCTTGTAAACCAATAAATTGGGCGGAGCCCGAGAGCTCTGGGCCGTGAGCAAGCCTCCGACGCTCCGGTCCCCTGGACCCGCCTTTTAAACGCTTATTCTGTCTCTTTCTAACTCCTTTGTCTCCGCCGGACTCGGGGTACCCGCCGGGTGGTGTGGGGCTGGTTTCCCCAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR14C | Jra | 334 | 343 | + | 14.69 | ATGACTCACG |
| LTR14C | BACH1 | 334 | 342 | + | 14.68 | ATGACTCAC |
| LTR14C | NFE2 | 334 | 343 | + | 14.65 | ATGACTCACG |
| LTR14C | Sox11 | 405 | 412 | + | 14.51 | GAACAAAG |
| LTR14C | ZFP14 | 378 | 392 | - | 14.49 | GGAGGGGGAGGAAGG |
| LTR14C | MAC1 | 285 | 292 | + | 14.47 | TTTGCTCA |
| LTR14C | Su(H) | 1 | 10 | + | 14.42 | TGTGGGAAAG |
| LTR14C | FOS::JUNB | 334 | 342 | - | 14.39 | GTGAGTCAT |
| LTR14C | FOSL2 | 333 | 342 | + | 14.35 | AATGACTCAC |
| LTR14C | FOSL2::JUND | 334 | 342 | + | 14.33 | ATGACTCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
