LTR14C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000412 |
|---|---|
| TE superfamily | ERV2 |
| TE order | LTR |
| Species | Catarrhini |
| Length | 587 |
| Kimura value | 5.32 |
| Tau index | 0.9690 |
| Description | LTR14C (Long Terminal Repeat) for HERVK14C endogenous retrovirus |
| Comment | Copies present at orthologous sites in old world monkeys, but absent from new world monkeys. |
| Sequence |
TGTGGGAAAGAGAGTTTCTGGGGTGCCAGNTGAGTTGGTCTCCCCTGTGTGAGACACCCATGGGGAGCCATGGGCGGCCTCTGAGGAGAAAAGTCTCCTTATTGCCTTCATGTCTTTATGCCCCGAGAGCATAACCGCTCAGCGGCATTCCACAGGTTGCTCAGGGAGATAACACTCCCTTGAAGCAGTGGAGTATAATCAAACATCTTGGCTCCTCCTGAAACCCGCTCCCACCCGTTTCAGTCCCGATAAGTTAAAGATCTTAAGTAGTTTAGACACACGCCTTTGCTCAAGGAAATTCACAGAAACCGCCACTGCTATACATCTTATCGAATGACTCACGAGTTCTCCTTCACTGATTAATCCTTTTCCTCATCCCTTCCTCCCCCTCCCATCTGCCCTAAGAACAAAGAGCTTGTAAACCAATAAATTGGGCGGAGCCCGAGAGCTCTGGGCCGTGAGCAAGCCTCCGACGCTCCGGTCCCCTGGACCCGCCTTTTAAACGCTTATTCTGTCTCTTTCTAACTCCTTTGTCTCCGCCGGACTCGGGGTACCCGCCGGGTGGTGTGGGGCTGGTTTCCCCAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR14C | ZNF16 | 59 | 79 | + | 20.00 | CATGGGGAGCCATGGGCGGCC |
| LTR14C | ZNF320 | 476 | 495 | - | 16.48 | GCGGGTCCAGGGGACCGGAG |
| LTR14C | MAZ | 386 | 393 | + | 16.08 | CCCCTCCC |
| LTR14C | AS2 | 525 | 542 | - | 16.00 | CGGCGGAGACAAAGGAGT |
| LTR14C | Sox14 | 526 | 536 | + | 15.44 | CTCCTTTGTCT |
| LTR14C | Wt1 | 382 | 391 | + | 15.32 | CCTCCCCCTC |
| LTR14C | CDC5 | 137 | 145 | + | 15.17 | GCTCAGCGG |
| LTR14C | JDP2 | 334 | 342 | + | 14.86 | ATGACTCAC |
| LTR14C | GAL4 | 444 | 458 | - | 14.78 | CGGCCCAGAGCTCTC |
| LTR14C | FOS::JUND | 334 | 342 | - | 14.73 | GTGAGTCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
