L1PREC2_orf2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000357 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 3294 |
| Kimura value | 11.30 |
| Tau index | 0.8290 |
| Description | ORF2 from L1 retrotransposon, L1PREC2_orf2 subfamily |
| Comment | - |
| Sequence |
ATGACAGGATCAAATCCACACATATCAATACTAACCTTGAATGTAAATGGGCTAAATGCCCCAATTAAAAGGCACAGAGTGGCAAGCTGGATAAAGAAGCAAGACCCAATGGTATGCTGTCTTCAAGAGACCCATCTCACATGCAATGACACCCATAGGCTCAAAATAAAGGGATGGAGAAAAATCTACCAAGCAAATGGAAAACAGAAAAAAGCAGGGGTTGCAATCCTAATTTCAGACAAAACAGACTTTAAACCAACAAAGATCAAAAAAGACAAAGAAGGGCATTACATAATGGTAAAGGGTTCAATTCAACAAGAAGACCTAACTATCCTAAATATATATGCACCCAACACAGGAGCACCCAGATTCATAAAGCAAGTTCTTAGAGACCTNCAAAGAGACTTAGACTCCCACACAATAATAGTGGGAGACTTCAACACCCCACTGACAGTATTAGACAGATCATCGAGGCAGAAAATTAACAAAGATATTCAGGACCTGAACTCAACACTGGACCAAATGGACCTGATAGACATCTACAGAACTCTCCACCCNAAAACAACAGAATATACATTCTTCTCATCGCCACATGGCACATACTCTAAAATCGACCACATAATCGGACATAAAACAATCCTCAGCAAATGCAAAAGAACCGAAATCATACCAAACACNCTCTCGGACCACAGCGCAATAAAAATAGAAATCAAGACTAAGAAAATCGCTCAAAACCATACAATTACATGGAAATTAAACAACCTGCTCCTGAATGACTTTTGGGTAAATAATGAAATTAAGGCAGAAATCAAGAAGTTCTTTGAAACTAATGAGAACAAAGATACAACATACCAGAATCTCTGGGACACAGCTAAGGCAGTGTTAAGAGGGAAATTTATAGCACTAAATGCCCACATCAAAAAGTTAGAAAGATCTCAAATTAACAACCTAACATCACAACTAAAAGAACTAGAGAAGCAAGAGCAAACCAACCCCAAAGCTAGCAGAAGACAAGAAATAACCAAAATCAGAGCTGAACTGAAGGAGATTGAGACACGAAAAACCATTCAAAAGATCAACGAATCCAGGAGTTGGTTTTTTGAAAAAATTAATAAGATAGATAGACCGCTAGCTAGACTAATAAAGAAGAAAAGAGAGAAGATCCAAATAAACACAATCAGAAATGACAAAGGGGATATTACCACTGACCCCACAGAAATACAAATAACCATCAGAGACTACTATGAACACCTCTATGCACACAAACTAGAAAACCTAGAAGAAATGGATAAATTCCTGGACACATACACCCTCCCAAGACTGAACCAGGAAGAAATTGAATCCCTGAACAGACCAATAACGAGCTCCGAAATTGAATCAGTAATAAATAGCCTACCAACCAAAAAAAGCCCAGGACCAGACGGATTCACAGCCGAATTCTACCAGATGTACAAAGAAGAGCTGGTACCATTCCTACTGAAACTATTCCAAAAAATTGAGGAGGAGGGACTCCTCCCTAACTCATTCTATGAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAGACACAACAAAAAAAGAAAACTTCAGGCCAATATCCTTGATGAACATCGATGCAAAAATCCTCAACAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTAATCCACCACGATCAAGTAGGCTTTATCCCTGGGATGCAAGGTTGGTTCAACATACGCAAATCAATAAATGTGATTCATCACATAAACAGAACTAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCTTTCGATAAAATTCAACATCCCTTCATGTTAAAAACTCTCAATAAACTAGGTATTGAAGGAACATACCTCAAAATAATAAGAGCCATCTATGACAAACCCACAGCCAACATCATACTGAATGGGCAAAAGCTGGAAGCATTCCCCTTGAAAACCGGCACAAGACAAGGATGCCCTCTCTCACCACTCCTATTCAACATAGTATTGGAAGTCCTGGCCAGAGCAATCAGGCAAGAGAAAGAAATAAAGGGCATCCAAATAGGAAGAGAGGAAGTCAAACTATCCCTGTTTGCAGACGACATGATTCTATATCTAGAAAACCCCATAGTCTCGGCCCAAAAGCTCCTTNAGCTGATAAACAACTTCAGCAAAGTTTCAGGATACAAAATCAATGTACAAAAATCACTAGCATTCCTATACACCAACAACAGCCAAGCCGAGAGCCAAATCAGGAACGCAATCCCATTCACAATTGCCACAAAAAGAATAAAATACCTAGGAATACAGCTAACCAGGGAGGTGAAAGATCTCTACAATGAGAATTACAAAACACTGCTCAAAGAAATCAGAGATGACACAAACAAATGGAAAAACATTCCATGCTCATGGATAGGAAGAATCAATATCGTTAAAATGGCCATACTGCCCAAAGCAATTTACAGATTCAATGCTATTCCTATCAAACTACCAATGACATTCTTCACAGAACTAGAAAAAACTATTTTAAAATTCATATGGAACCAAAAAAGAGCCCGAATAGCCAAGGCAATCCTAAGCAAAAAGAACAAAGCTGGAGGCATCACGCTACCCGACTTCAAACTATACTACAGGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGACACATAGACCAATGGAACAGAATAGAGAGCCCAGAAATAAGGCCGCACACCTACAACCATCTGATCTTCGACAAAGCTGACAAAAACAAGCAATGGGGAAAGGACTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTAGCCATATGCAGAAGATTGAAACTGGACCCCTTCCTTACACCATATACAAAAATCAACTCAAGATGGATTAAAGACTTAAATGTAAAACCCAAAACTATAAAAACCCTGGAAGACAACCTAGGCAATACCATTCTGGACATAGGAACGGGCAAAGATTTCATGACGAAGACGCCAAAAGCAATTGCAACAAAAGCAAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTATCAACAGAGTAAACAGACAACCTACAGAATGGGAGAAAATNTTTGCAAACTATGCATCTGACAAAGGTCTAATATCCAGCATCTATAAGGAACTTAAACAAATTTACAAGAAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACATGCGGCCAACAAGCATATGAAAAAAAGCTCAACATCA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PREC2_orf2 | squamosa | 1573 | 1585 | + | 15.16 | ACAAAAAAAGAAA |
| L1PREC2_orf2 | lsy-2 | 2642 | 2649 | + | 15.13 | CTACAGTA |
| L1PREC2_orf2 | IDD1 | 269 | 280 | - | 15.13 | CTTTGTCTTTTT |
| L1PREC2_orf2 | AP3 | 1573 | 1585 | + | 15.13 | ACAAAAAAAGAAA |
| L1PREC2_orf2 | AGL6 | 2282 | 2300 | + | 15.11 | TTGCCACAAAAAGAATAAA |
| L1PREC2_orf2 | ZNF324 | 1708 | 1721 | + | 15.06 | ATGCAAGGTTGGTT |
| L1PREC2_orf2 | TCX6 | 3171 | 3185 | - | 15.04 | TTGTAAATTTGTTTA |
| L1PREC2_orf2 | pha-4 | 3082 | 3091 | + | 14.98 | AGAGTAAACA |
| L1PREC2_orf2 | CDX4 | 694 | 702 | + | 14.91 | GCAATAAAA |
| L1PREC2_orf2 | SOL1 | 2531 | 2545 | - | 14.91 | ATATGAATTTTAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
