L1PREC2_orf2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000357 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 3294 |
| Kimura value | 11.30 |
| Tau index | 0.8290 |
| Description | ORF2 from L1 retrotransposon, L1PREC2_orf2 subfamily |
| Comment | - |
| Sequence |
ATGACAGGATCAAATCCACACATATCAATACTAACCTTGAATGTAAATGGGCTAAATGCCCCAATTAAAAGGCACAGAGTGGCAAGCTGGATAAAGAAGCAAGACCCAATGGTATGCTGTCTTCAAGAGACCCATCTCACATGCAATGACACCCATAGGCTCAAAATAAAGGGATGGAGAAAAATCTACCAAGCAAATGGAAAACAGAAAAAAGCAGGGGTTGCAATCCTAATTTCAGACAAAACAGACTTTAAACCAACAAAGATCAAAAAAGACAAAGAAGGGCATTACATAATGGTAAAGGGTTCAATTCAACAAGAAGACCTAACTATCCTAAATATATATGCACCCAACACAGGAGCACCCAGATTCATAAAGCAAGTTCTTAGAGACCTNCAAAGAGACTTAGACTCCCACACAATAATAGTGGGAGACTTCAACACCCCACTGACAGTATTAGACAGATCATCGAGGCAGAAAATTAACAAAGATATTCAGGACCTGAACTCAACACTGGACCAAATGGACCTGATAGACATCTACAGAACTCTCCACCCNAAAACAACAGAATATACATTCTTCTCATCGCCACATGGCACATACTCTAAAATCGACCACATAATCGGACATAAAACAATCCTCAGCAAATGCAAAAGAACCGAAATCATACCAAACACNCTCTCGGACCACAGCGCAATAAAAATAGAAATCAAGACTAAGAAAATCGCTCAAAACCATACAATTACATGGAAATTAAACAACCTGCTCCTGAATGACTTTTGGGTAAATAATGAAATTAAGGCAGAAATCAAGAAGTTCTTTGAAACTAATGAGAACAAAGATACAACATACCAGAATCTCTGGGACACAGCTAAGGCAGTGTTAAGAGGGAAATTTATAGCACTAAATGCCCACATCAAAAAGTTAGAAAGATCTCAAATTAACAACCTAACATCACAACTAAAAGAACTAGAGAAGCAAGAGCAAACCAACCCCAAAGCTAGCAGAAGACAAGAAATAACCAAAATCAGAGCTGAACTGAAGGAGATTGAGACACGAAAAACCATTCAAAAGATCAACGAATCCAGGAGTTGGTTTTTTGAAAAAATTAATAAGATAGATAGACCGCTAGCTAGACTAATAAAGAAGAAAAGAGAGAAGATCCAAATAAACACAATCAGAAATGACAAAGGGGATATTACCACTGACCCCACAGAAATACAAATAACCATCAGAGACTACTATGAACACCTCTATGCACACAAACTAGAAAACCTAGAAGAAATGGATAAATTCCTGGACACATACACCCTCCCAAGACTGAACCAGGAAGAAATTGAATCCCTGAACAGACCAATAACGAGCTCCGAAATTGAATCAGTAATAAATAGCCTACCAACCAAAAAAAGCCCAGGACCAGACGGATTCACAGCCGAATTCTACCAGATGTACAAAGAAGAGCTGGTACCATTCCTACTGAAACTATTCCAAAAAATTGAGGAGGAGGGACTCCTCCCTAACTCATTCTATGAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAGACACAACAAAAAAAGAAAACTTCAGGCCAATATCCTTGATGAACATCGATGCAAAAATCCTCAACAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTAATCCACCACGATCAAGTAGGCTTTATCCCTGGGATGCAAGGTTGGTTCAACATACGCAAATCAATAAATGTGATTCATCACATAAACAGAACTAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCTTTCGATAAAATTCAACATCCCTTCATGTTAAAAACTCTCAATAAACTAGGTATTGAAGGAACATACCTCAAAATAATAAGAGCCATCTATGACAAACCCACAGCCAACATCATACTGAATGGGCAAAAGCTGGAAGCATTCCCCTTGAAAACCGGCACAAGACAAGGATGCCCTCTCTCACCACTCCTATTCAACATAGTATTGGAAGTCCTGGCCAGAGCAATCAGGCAAGAGAAAGAAATAAAGGGCATCCAAATAGGAAGAGAGGAAGTCAAACTATCCCTGTTTGCAGACGACATGATTCTATATCTAGAAAACCCCATAGTCTCGGCCCAAAAGCTCCTTNAGCTGATAAACAACTTCAGCAAAGTTTCAGGATACAAAATCAATGTACAAAAATCACTAGCATTCCTATACACCAACAACAGCCAAGCCGAGAGCCAAATCAGGAACGCAATCCCATTCACAATTGCCACAAAAAGAATAAAATACCTAGGAATACAGCTAACCAGGGAGGTGAAAGATCTCTACAATGAGAATTACAAAACACTGCTCAAAGAAATCAGAGATGACACAAACAAATGGAAAAACATTCCATGCTCATGGATAGGAAGAATCAATATCGTTAAAATGGCCATACTGCCCAAAGCAATTTACAGATTCAATGCTATTCCTATCAAACTACCAATGACATTCTTCACAGAACTAGAAAAAACTATTTTAAAATTCATATGGAACCAAAAAAGAGCCCGAATAGCCAAGGCAATCCTAAGCAAAAAGAACAAAGCTGGAGGCATCACGCTACCCGACTTCAAACTATACTACAGGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGACACATAGACCAATGGAACAGAATAGAGAGCCCAGAAATAAGGCCGCACACCTACAACCATCTGATCTTCGACAAAGCTGACAAAAACAAGCAATGGGGAAAGGACTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTAGCCATATGCAGAAGATTGAAACTGGACCCCTTCCTTACACCATATACAAAAATCAACTCAAGATGGATTAAAGACTTAAATGTAAAACCCAAAACTATAAAAACCCTGGAAGACAACCTAGGCAATACCATTCTGGACATAGGAACGGGCAAAGATTTCATGACGAAGACGCCAAAAGCAATTGCAACAAAAGCAAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTATCAACAGAGTAAACAGACAACCTACAGAATGGGAGAAAATNTTTGCAAACTATGCATCTGACAAAGGTCTAATATCCAGCATCTATAAGGAACTTAAACAAATTTACAAGAAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACATGCGGCCAACAAGCATATGAAAAAAAGCTCAACATCA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PREC2_orf2 | ZNF382 | 1191 | 1214 | + | 34.76 | AGGGGATATTACCACTGACCCCAC |
| L1PREC2_orf2 | PI | 1573 | 1586 | + | 18.27 | ACAAAAAAAGAAAA |
| L1PREC2_orf2 | ZNF558 | 3212 | 3240 | + | 17.64 | AGTGGGCAAAGGACATGAACAGACACTTT |
| L1PREC2_orf2 | AP1 | 1573 | 1585 | + | 17.19 | ACAAAAAAAGAAA |
| L1PREC2_orf2 | lsl-1 | 2642 | 2652 | + | 17.08 | CTACAGTAACC |
| L1PREC2_orf2 | SOC1 | 1573 | 1585 | - | 16.66 | TTTCTTTTTTTGT |
| L1PREC2_orf2 | CIN5 | 287 | 296 | + | 16.57 | ATTACATAAT |
| L1PREC2_orf2 | SGR5 | 268 | 280 | + | 16.52 | AAAAAAGACAAAG |
| L1PREC2_orf2 | AGL27 | 697 | 710 | - | 16.50 | ATTTCTATTTTTAT |
| L1PREC2_orf2 | DOF5.8 | 1141 | 1159 | - | 16.41 | TCTCTCTTTTCTTCTTTAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
