L1PREC2_orf2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000357 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 3294 |
| Kimura value | 11.30 |
| Tau index | 0.8290 |
| Description | ORF2 from L1 retrotransposon, L1PREC2_orf2 subfamily |
| Comment | - |
| Sequence |
ATGACAGGATCAAATCCACACATATCAATACTAACCTTGAATGTAAATGGGCTAAATGCCCCAATTAAAAGGCACAGAGTGGCAAGCTGGATAAAGAAGCAAGACCCAATGGTATGCTGTCTTCAAGAGACCCATCTCACATGCAATGACACCCATAGGCTCAAAATAAAGGGATGGAGAAAAATCTACCAAGCAAATGGAAAACAGAAAAAAGCAGGGGTTGCAATCCTAATTTCAGACAAAACAGACTTTAAACCAACAAAGATCAAAAAAGACAAAGAAGGGCATTACATAATGGTAAAGGGTTCAATTCAACAAGAAGACCTAACTATCCTAAATATATATGCACCCAACACAGGAGCACCCAGATTCATAAAGCAAGTTCTTAGAGACCTNCAAAGAGACTTAGACTCCCACACAATAATAGTGGGAGACTTCAACACCCCACTGACAGTATTAGACAGATCATCGAGGCAGAAAATTAACAAAGATATTCAGGACCTGAACTCAACACTGGACCAAATGGACCTGATAGACATCTACAGAACTCTCCACCCNAAAACAACAGAATATACATTCTTCTCATCGCCACATGGCACATACTCTAAAATCGACCACATAATCGGACATAAAACAATCCTCAGCAAATGCAAAAGAACCGAAATCATACCAAACACNCTCTCGGACCACAGCGCAATAAAAATAGAAATCAAGACTAAGAAAATCGCTCAAAACCATACAATTACATGGAAATTAAACAACCTGCTCCTGAATGACTTTTGGGTAAATAATGAAATTAAGGCAGAAATCAAGAAGTTCTTTGAAACTAATGAGAACAAAGATACAACATACCAGAATCTCTGGGACACAGCTAAGGCAGTGTTAAGAGGGAAATTTATAGCACTAAATGCCCACATCAAAAAGTTAGAAAGATCTCAAATTAACAACCTAACATCACAACTAAAAGAACTAGAGAAGCAAGAGCAAACCAACCCCAAAGCTAGCAGAAGACAAGAAATAACCAAAATCAGAGCTGAACTGAAGGAGATTGAGACACGAAAAACCATTCAAAAGATCAACGAATCCAGGAGTTGGTTTTTTGAAAAAATTAATAAGATAGATAGACCGCTAGCTAGACTAATAAAGAAGAAAAGAGAGAAGATCCAAATAAACACAATCAGAAATGACAAAGGGGATATTACCACTGACCCCACAGAAATACAAATAACCATCAGAGACTACTATGAACACCTCTATGCACACAAACTAGAAAACCTAGAAGAAATGGATAAATTCCTGGACACATACACCCTCCCAAGACTGAACCAGGAAGAAATTGAATCCCTGAACAGACCAATAACGAGCTCCGAAATTGAATCAGTAATAAATAGCCTACCAACCAAAAAAAGCCCAGGACCAGACGGATTCACAGCCGAATTCTACCAGATGTACAAAGAAGAGCTGGTACCATTCCTACTGAAACTATTCCAAAAAATTGAGGAGGAGGGACTCCTCCCTAACTCATTCTATGAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAGACACAACAAAAAAAGAAAACTTCAGGCCAATATCCTTGATGAACATCGATGCAAAAATCCTCAACAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTAATCCACCACGATCAAGTAGGCTTTATCCCTGGGATGCAAGGTTGGTTCAACATACGCAAATCAATAAATGTGATTCATCACATAAACAGAACTAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCTTTCGATAAAATTCAACATCCCTTCATGTTAAAAACTCTCAATAAACTAGGTATTGAAGGAACATACCTCAAAATAATAAGAGCCATCTATGACAAACCCACAGCCAACATCATACTGAATGGGCAAAAGCTGGAAGCATTCCCCTTGAAAACCGGCACAAGACAAGGATGCCCTCTCTCACCACTCCTATTCAACATAGTATTGGAAGTCCTGGCCAGAGCAATCAGGCAAGAGAAAGAAATAAAGGGCATCCAAATAGGAAGAGAGGAAGTCAAACTATCCCTGTTTGCAGACGACATGATTCTATATCTAGAAAACCCCATAGTCTCGGCCCAAAAGCTCCTTNAGCTGATAAACAACTTCAGCAAAGTTTCAGGATACAAAATCAATGTACAAAAATCACTAGCATTCCTATACACCAACAACAGCCAAGCCGAGAGCCAAATCAGGAACGCAATCCCATTCACAATTGCCACAAAAAGAATAAAATACCTAGGAATACAGCTAACCAGGGAGGTGAAAGATCTCTACAATGAGAATTACAAAACACTGCTCAAAGAAATCAGAGATGACACAAACAAATGGAAAAACATTCCATGCTCATGGATAGGAAGAATCAATATCGTTAAAATGGCCATACTGCCCAAAGCAATTTACAGATTCAATGCTATTCCTATCAAACTACCAATGACATTCTTCACAGAACTAGAAAAAACTATTTTAAAATTCATATGGAACCAAAAAAGAGCCCGAATAGCCAAGGCAATCCTAAGCAAAAAGAACAAAGCTGGAGGCATCACGCTACCCGACTTCAAACTATACTACAGGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGACACATAGACCAATGGAACAGAATAGAGAGCCCAGAAATAAGGCCGCACACCTACAACCATCTGATCTTCGACAAAGCTGACAAAAACAAGCAATGGGGAAAGGACTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTAGCCATATGCAGAAGATTGAAACTGGACCCCTTCCTTACACCATATACAAAAATCAACTCAAGATGGATTAAAGACTTAAATGTAAAACCCAAAACTATAAAAACCCTGGAAGACAACCTAGGCAATACCATTCTGGACATAGGAACGGGCAAAGATTTCATGACGAAGACGCCAAAAGCAATTGCAACAAAAGCAAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTATCAACAGAGTAAACAGACAACCTACAGAATGGGAGAAAATNTTTGCAAACTATGCATCTGACAAAGGTCTAATATCCAGCATCTATAAGGAACTTAAACAAATTTACAAGAAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACATGCGGCCAACAAGCATATGAAAAAAAGCTCAACATCA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PREC2_orf2 | CDF5 | 2042 | 2062 | - | 16.30 | TGCCCTTTATTTCTTTCTCTT |
| L1PREC2_orf2 | SGR5 | 1765 | 1777 | + | 16.21 | ACTAAAGACAAAA |
| L1PREC2_orf2 | AP1 | 697 | 709 | + | 16.11 | ATAAAAATAGAAA |
| L1PREC2_orf2 | DOF5.1 | 1141 | 1159 | + | 16.05 | ATAAAGAAGAAAAGAGAGA |
| L1PREC2_orf2 | CG4360 | 1570 | 1582 | + | 16.02 | ACAACAAAAAAAG |
| L1PREC2_orf2 | FLC | 1573 | 1586 | + | 16.01 | ACAAAAAAAGAAAA |
| L1PREC2_orf2 | AGL27 | 1573 | 1586 | - | 15.96 | TTTTCTTTTTTTGT |
| L1PREC2_orf2 | ZNF418 | 2989 | 3003 | + | 15.89 | AAGACGCCAAAAGCA |
| L1PREC2_orf2 | SPIB | 2074 | 2086 | - | 15.81 | TGACTTCCTCTCT |
| L1PREC2_orf2 | MGP | 269 | 281 | + | 15.76 | AAAAAGACAAAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
