L1PREC2_orf2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000357 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 3294 |
| Kimura value | 11.30 |
| Tau index | 0.8290 |
| Description | ORF2 from L1 retrotransposon, L1PREC2_orf2 subfamily |
| Comment | - |
| Sequence |
ATGACAGGATCAAATCCACACATATCAATACTAACCTTGAATGTAAATGGGCTAAATGCCCCAATTAAAAGGCACAGAGTGGCAAGCTGGATAAAGAAGCAAGACCCAATGGTATGCTGTCTTCAAGAGACCCATCTCACATGCAATGACACCCATAGGCTCAAAATAAAGGGATGGAGAAAAATCTACCAAGCAAATGGAAAACAGAAAAAAGCAGGGGTTGCAATCCTAATTTCAGACAAAACAGACTTTAAACCAACAAAGATCAAAAAAGACAAAGAAGGGCATTACATAATGGTAAAGGGTTCAATTCAACAAGAAGACCTAACTATCCTAAATATATATGCACCCAACACAGGAGCACCCAGATTCATAAAGCAAGTTCTTAGAGACCTNCAAAGAGACTTAGACTCCCACACAATAATAGTGGGAGACTTCAACACCCCACTGACAGTATTAGACAGATCATCGAGGCAGAAAATTAACAAAGATATTCAGGACCTGAACTCAACACTGGACCAAATGGACCTGATAGACATCTACAGAACTCTCCACCCNAAAACAACAGAATATACATTCTTCTCATCGCCACATGGCACATACTCTAAAATCGACCACATAATCGGACATAAAACAATCCTCAGCAAATGCAAAAGAACCGAAATCATACCAAACACNCTCTCGGACCACAGCGCAATAAAAATAGAAATCAAGACTAAGAAAATCGCTCAAAACCATACAATTACATGGAAATTAAACAACCTGCTCCTGAATGACTTTTGGGTAAATAATGAAATTAAGGCAGAAATCAAGAAGTTCTTTGAAACTAATGAGAACAAAGATACAACATACCAGAATCTCTGGGACACAGCTAAGGCAGTGTTAAGAGGGAAATTTATAGCACTAAATGCCCACATCAAAAAGTTAGAAAGATCTCAAATTAACAACCTAACATCACAACTAAAAGAACTAGAGAAGCAAGAGCAAACCAACCCCAAAGCTAGCAGAAGACAAGAAATAACCAAAATCAGAGCTGAACTGAAGGAGATTGAGACACGAAAAACCATTCAAAAGATCAACGAATCCAGGAGTTGGTTTTTTGAAAAAATTAATAAGATAGATAGACCGCTAGCTAGACTAATAAAGAAGAAAAGAGAGAAGATCCAAATAAACACAATCAGAAATGACAAAGGGGATATTACCACTGACCCCACAGAAATACAAATAACCATCAGAGACTACTATGAACACCTCTATGCACACAAACTAGAAAACCTAGAAGAAATGGATAAATTCCTGGACACATACACCCTCCCAAGACTGAACCAGGAAGAAATTGAATCCCTGAACAGACCAATAACGAGCTCCGAAATTGAATCAGTAATAAATAGCCTACCAACCAAAAAAAGCCCAGGACCAGACGGATTCACAGCCGAATTCTACCAGATGTACAAAGAAGAGCTGGTACCATTCCTACTGAAACTATTCCAAAAAATTGAGGAGGAGGGACTCCTCCCTAACTCATTCTATGAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAGACACAACAAAAAAAGAAAACTTCAGGCCAATATCCTTGATGAACATCGATGCAAAAATCCTCAACAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTAATCCACCACGATCAAGTAGGCTTTATCCCTGGGATGCAAGGTTGGTTCAACATACGCAAATCAATAAATGTGATTCATCACATAAACAGAACTAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCTTTCGATAAAATTCAACATCCCTTCATGTTAAAAACTCTCAATAAACTAGGTATTGAAGGAACATACCTCAAAATAATAAGAGCCATCTATGACAAACCCACAGCCAACATCATACTGAATGGGCAAAAGCTGGAAGCATTCCCCTTGAAAACCGGCACAAGACAAGGATGCCCTCTCTCACCACTCCTATTCAACATAGTATTGGAAGTCCTGGCCAGAGCAATCAGGCAAGAGAAAGAAATAAAGGGCATCCAAATAGGAAGAGAGGAAGTCAAACTATCCCTGTTTGCAGACGACATGATTCTATATCTAGAAAACCCCATAGTCTCGGCCCAAAAGCTCCTTNAGCTGATAAACAACTTCAGCAAAGTTTCAGGATACAAAATCAATGTACAAAAATCACTAGCATTCCTATACACCAACAACAGCCAAGCCGAGAGCCAAATCAGGAACGCAATCCCATTCACAATTGCCACAAAAAGAATAAAATACCTAGGAATACAGCTAACCAGGGAGGTGAAAGATCTCTACAATGAGAATTACAAAACACTGCTCAAAGAAATCAGAGATGACACAAACAAATGGAAAAACATTCCATGCTCATGGATAGGAAGAATCAATATCGTTAAAATGGCCATACTGCCCAAAGCAATTTACAGATTCAATGCTATTCCTATCAAACTACCAATGACATTCTTCACAGAACTAGAAAAAACTATTTTAAAATTCATATGGAACCAAAAAAGAGCCCGAATAGCCAAGGCAATCCTAAGCAAAAAGAACAAAGCTGGAGGCATCACGCTACCCGACTTCAAACTATACTACAGGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGACACATAGACCAATGGAACAGAATAGAGAGCCCAGAAATAAGGCCGCACACCTACAACCATCTGATCTTCGACAAAGCTGACAAAAACAAGCAATGGGGAAAGGACTCCCTATTCAATAAATGGTGCTGGGATAACTGGCTAGCCATATGCAGAAGATTGAAACTGGACCCCTTCCTTACACCATATACAAAAATCAACTCAAGATGGATTAAAGACTTAAATGTAAAACCCAAAACTATAAAAACCCTGGAAGACAACCTAGGCAATACCATTCTGGACATAGGAACGGGCAAAGATTTCATGACGAAGACGCCAAAAGCAATTGCAACAAAAGCAAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTATCAACAGAGTAAACAGACAACCTACAGAATGGGAGAAAATNTTTGCAAACTATGCATCTGACAAAGGTCTAATATCCAGCATCTATAAGGAACTTAAACAAATTTACAAGAAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACATGCGGCCAACAAGCATATGAAAAAAAGCTCAACATCA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PREC2_orf2 | BCL6B | 2016 | 2032 | - | -15.96 | CTCTGGCCAGGACTTCC |
| L1PREC2_orf2 | EWSR1-FLI1 | 793 | 810 | + | -16.12 | GAAATTAAGGCAGAAATC |
| L1PREC2_orf2 | BPC5 | 1131 | 1160 | + | -32.51 | AGCTAGACTAATAAAGAAGAAAAGAGAGAA |
| L1PREC2_orf2 | BPC5 | 3208 | 3237 | + | -45.85 | AAAAAGTGGGCAAAGGACATGAACAGACAC |
| L1PREC2_orf2 | BPC5 | 2029 | 2058 | + | -46.63 | AGAGCAATCAGGCAAGAGAAAGAAATAAAG |
| L1PREC2_orf2 | BPC5 | 253 | 282 | + | -46.93 | AAACCAACAAAGATCAAAAAAGACAAAGAA |
| L1PREC2_orf2 | BPC5 | 259 | 288 | + | -48.30 | ACAAAGATCAAAAAAGACAAAGAAGGGCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
