L1PA15_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000335 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 912 |
| Kimura value | 12.09 |
| Tau index | 0.9478 |
| Description | 3' end of L1 retrotransposon, L1PA15_3end subfamily |
| Comment | ORF2 ends at bp ~684 |
| Sequence |
CTAATATCCAGAATCTATAAGGAACTTAAACAAATTAACAAGCAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACACGCGGCCAACAAGCATATGAAAAAATGCTCAACATCACTAATCATTAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTCAGAATGGCTATTATTAAAAAGTCAAAAAATAACAGATGCTGGCGAGGTTGCGGAGAAAAGGGAACGCTTATACACTGCTGGTGGGAATGTAAATTAGTTCAGCCACTGTGGAAAGCAGTTTGGCGATTTCTCAAAGAACTTAAAACAGAACTACCATTCGACCCAGCAATCCCATTATTGGGTATATACCCAAAGGAATATAAATCGTTCTACCATAAAGACACATGCACGCGTATGTTCATCGCAGCACTATTCACAATAGCAAAGACATGGAATCAACCTAAATGCCCATCAACGGTAGACTGGATAAAGAAAATGTGGTACATATACACCATGGAATACTACGCAGCCATAAAAAAGAACGAGATCATGTCCTTTGCAGCAACATGGATGGAGCTGGAGGCCATTATCCTAAGCGAACTAACGCAGGAACAGAAAACCAAATACCGCATGTTCTCACTTATAAGTGGGAGCTAAACATTGAGTACACATGGACACAAAGAAGGGAACAACAGACACCGGGGCCTACTTGAGGGTGGAGGGTGGGAGGAGGGTGAGGATCGAAAAACTACCTATCGGGTACTATGCTTATTACCTGGGTGACGAAATAATCTGTACACCAAACCCCCGTGACACGCAATTTACCTATATAACAAACCTGCACATGTACCCCTGAACCTAAAATAAAAGTTAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PA15_3end | DOF5.1 | 223 | 241 | + | 14.98 | AAAAAGTCAAAAAATAACA |
| L1PA15_3end | MYB107 | 825 | 832 | + | 14.64 | CACCAAAC |
| L1PA15_3end | Nr2e1 | 224 | 232 | + | 14.59 | AAAAGTCAA |
| L1PA15_3end | dsf | 224 | 231 | + | 14.52 | AAAAGTCA |
| L1PA15_3end | CDF3 | 64 | 71 | + | 14.46 | AAAAAGTG |
| L1PA15_3end | WRKY3 | 224 | 234 | + | 14.42 | AAAAGTCAAAA |
| L1PA15_3end | NAC079 | 840 | 847 | + | 14.36 | ACACGCAA |
| L1PA15_3end | ZIM3 | 637 | 647 | + | 14.32 | GAACAGAAAAC |
| L1PA15_3end | ZNF189 | 636 | 644 | - | 14.31 | TTCTGTTCC |
| L1PA15_3end | tbx-37 | 659 | 670 | - | 14.27 | TAAGTGAGAACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
