L1PA15_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000335 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 912 |
| Kimura value | 12.09 |
| Tau index | 0.9478 |
| Description | 3' end of L1 retrotransposon, L1PA15_3end subfamily |
| Comment | ORF2 ends at bp ~684 |
| Sequence |
CTAATATCCAGAATCTATAAGGAACTTAAACAAATTAACAAGCAAAAAACAAACAACCCCATTAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACACGCGGCCAACAAGCATATGAAAAAATGCTCAACATCACTAATCATTAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTCAGAATGGCTATTATTAAAAAGTCAAAAAATAACAGATGCTGGCGAGGTTGCGGAGAAAAGGGAACGCTTATACACTGCTGGTGGGAATGTAAATTAGTTCAGCCACTGTGGAAAGCAGTTTGGCGATTTCTCAAAGAACTTAAAACAGAACTACCATTCGACCCAGCAATCCCATTATTGGGTATATACCCAAAGGAATATAAATCGTTCTACCATAAAGACACATGCACGCGTATGTTCATCGCAGCACTATTCACAATAGCAAAGACATGGAATCAACCTAAATGCCCATCAACGGTAGACTGGATAAAGAAAATGTGGTACATATACACCATGGAATACTACGCAGCCATAAAAAAGAACGAGATCATGTCCTTTGCAGCAACATGGATGGAGCTGGAGGCCATTATCCTAAGCGAACTAACGCAGGAACAGAAAACCAAATACCGCATGTTCTCACTTATAAGTGGGAGCTAAACATTGAGTACACATGGACACAAAGAAGGGAACAACAGACACCGGGGCCTACTTGAGGGTGGAGGGTGGGAGGAGGGTGAGGATCGAAAAACTACCTATCGGGTACTATGCTTATTACCTGGGTGACGAAATAATCTGTACACCAAACCCCCGTGACACGCAATTTACCTATATAACAAACCTGCACATGTACCCCTGAACCTAAAATAAAAGTTAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PA15_3end | ZNF8 | 520 | 539 | - | 27.04 | GTGTATATGTACCACATTTT |
| L1PA15_3end | DOF5.1 | 892 | 910 | + | 19.92 | TAAAAGTTAAAAAAAAAAA |
| L1PA15_3end | DOF5.8 | 892 | 910 | - | 19.71 | TTTTTTTTTTTAACTTTTA |
| L1PA15_3end | ZNF558 | 68 | 96 | + | 17.64 | AGTGGGCAAAGGACATGAACAGACACTTT |
| L1PA15_3end | USV1 | 875 | 884 | + | 17.20 | TACCCCTGAA |
| L1PA15_3end | DOF3.6 | 889 | 909 | - | 17.12 | TTTTTTTTTTAACTTTTATTT |
| L1PA15_3end | tll | 224 | 233 | + | 17.07 | AAAAGTCAAA |
| L1PA15_3end | DOF5.8 | 223 | 241 | - | 17.05 | TGTTATTTTTTGACTTTTT |
| L1PA15_3end | DOF3.4 | 892 | 908 | - | 17.00 | TTTTTTTTTAACTTTTA |
| L1PA15_3end | WRKY50 | 224 | 232 | - | 16.45 | TTGACTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
